Alignment of sequences of cytochrome b from bacteria

Mauro Degli Esposti, March 1993

+ Chromatium vinosum from D. Knaff's lab

note PVWY in place of conserved PEWY. Sunflower (Helianthus annuus) has PQWY.

Rrubrum  **************ALKWFDERLPVLTVAHKELVVYPAPRNLNYFWNFGSLAGIAMIIMIAT
Rviridis **************IERWLDTRLPIVRMMYDQFVAFPVPKNINYAYAFGAILAVFLIIQIVS
Bjaponic **************ALQWIERRLPILGLMHSSFVAYPTPRNLNYWWTFGAILSFMLGMQILT
Rcapsula MSGIPHDHYEPKTGIEKWLHDRLPIVGLVYDTIM*IPTPKNLNWWWIWGIVLAFTLVLQIVT
Rsphaero MSGIPHDHYEPRTGIEKWLHSRLPIVALAYDTIM*IPTPRNLNWMWIWGVVLAFCLVLQIVT
Pdenitri MAGIPHDHYEPKTGFERWLHRRLPIVSLVYDTLM*IPTPKNLNWWWIWGIVLAFCLVLQIAT
Chromvin        msaektenlswidkrfplsetwrnhlseyyapknlnfwsffgslailtlviqivt

Rrubrum  GIFLAMSYTAH*VDHAFDSVERIMRDVNYGWLMRYMHANGASMFFIVVYVHMFRGLYYGSYK
Rviridis GVVLAMHYVAQ*DTLAFASIEHIMRDVNYGWLIRYIHMNGASFFFFAVYAHTFRGMYYGSYK
Bjaponic GVILAMHYTPH*ADLAFKSVELIVRDVNYGWLLRNMHACGASMFFFAVYVHMLRGLYYGSYK
Rcapsula GIVLAMHYTPH*VDLAFASVEHIMRDVNGGWAMRYIHANGASLFFLAVYIHIFRGLYYGSYK
Rsphaero GIVLAMHYTPH*VDLAFASVEHIMRNVNGGFMLRYLHANGASLFFIAVYLHIFRGLYYGSYK
Pdenitri GIVLVMHYTPH*VDLAFASVEHIMRDVNGGYMLRYLHANGASLFFLAVYIHIFRGLYYGSYK
Chromvin gvwlamsykpd*aglafasveyimrdvdwgwlirymhstgasmffiviylhmfrgllrgsyr

Rrubrum  PPREVLWWLGLVILLLMMATAFMGYVLPWGQMSFWGATVITNLFSAIPVV*GDDIVTLLWGG
Rviridis EPREVLWILGVIIIILMMATAFMGYVLPWGQMSFWGATVITNLFSAIPYI*GDPIVTWLWGG
Bjaponic EPREVLWILGVIIYLLMMATGFMGYVLPWGQMSFWGATVITNLFSAIPYF*GESIVTLLWGG
Rcapsula APREITWIVGMVIYLLMMGTAFMGYVLPWGQMSFWGATVITGLFGAIPGI*GPSIQAWLLGG
Rsphaero APREVTWIVGMLIYLAMMATAFMGYVLPWGQMSFWGATVITGLFGAIPGI*GHSIQTWLLGG
Pdenitri APREVTWIVGMLIYLMMMGTAFMGYVLPWGQMSFWGATVITGLFGAIPGV*GEAIQTWLLGG
Chromvin kprellwmigvviylvmmataffgyllpwgqmsywgaqvivnlfaavpvv*gedlsvwvrgd

Rrubrum  FSVDNPTLNRFFSLH*YLFPMLLFAVVFLHMWALH*VKKSNNPLGID******AKGPFDTIP
Rviridis YSVGNPTLTRFYSLH*YLLPFVIVGVVMLHVWALH*VTGQTNPTGVEVK******SEKDTVR
Bjaponic YSVGNPTLNRFFSLH*YLLPFLIAGVVVLHVWALH*VAGQNNPEGVEPK******SEKDTVP
Rcapsula PAVDNATLNRFFSLH*YLLPFVIAALVAIHIWAFH*TTGNNNPTGVEVRRTSKADAEKDTLP
Rsphaero PAVDNATLNRFFSLH*YLLPFVIAALVAIHIWAFH*STGNNNPTGVEVRRTSKAEAQKDTVP
Pdenitri PAVDNPTLNRFFSLH*YLLPFVIAALVVVHIWAFH*TTGNNNPTGVEVRRGSKEEAKKDTLP
Chromvin fvisdatlnrffafh*fllpfllaglvflhivalh*hvgsnnpdgieikegpkgnrwsdkapradgip

Rrubrum  FHPY**YTVKDAFGLGIFLMVFCFFVFFA**************PNFFGEPDNYIPANPMVTPTH***
Rviridis FTFP**ALTKDAVALGVCFIAFAWFVFFV**************PNYLGHADNYIPANPGVTPAH***
Bjaponic FTPH**ATIKDMFGVACFLLLYAWFIFYM**************PNYLGDADNYIPANPGVTPPH***
Rcapsula FWPY**FVIKDLFALALVLLGFFAVVAYM**************PNYLGHPDNYVQANPLSTPAH***
Rsphaero FWPY**FIIKDVFALAVVLLVFFAIVGFM**************PNYLGHPDNYIEANPLSTPAH***
Pdenitri FWPY**FVIKDLFALAVVLVVFFAIVGFM**************PNYLGHPDNYIEANPLVTPAH***
Chromvin fhpy**ytvkdlmgv****vvflaifgyvmffnptmgglfleapnf*******qpanpmqtpah***

Rrubrum  IVPEWYFLPFYAILRA******************VPDKLGGVLAMFGAILILFVLPWLDTSK*****V
Rviridis IVPEWYLLPFYAILRA******************VPDKLGGVIAMFGALVVLLFLPWLDGSK*****V
Bjaponic IVPEWYYLPFYAILRS******************IPNKLAGVIGMFSAIIILCFLPWLDAAK*****T
Rcapsula IVPEWYFLPFYAILRAFAADVWVVILVDGLTFGIVDAKFFGVIAMFGAIAVMALAPWLDTSK*****V
Rsphaero IVPEWYFLPFYAILRAFTADVWVVQIANFISFGIIDAKFFGVLAMFGAILVMALVPWLDTSP*****V
Pdenitri IVPEWYFLPFYAILRAFTADVWVVMLVNWLSFGIIDAKFFGVIAMFGAILVMALVPWLDTSR*****V
Chromvin iapvwyftpfyamlravppm**************ygsqfpgvvvmfaaililfvlpwldrsp*****v
            ^

Rrubrum  R*******************SATF**RPVFKGFFWVFLADCLLLGYLGAM*PAEEPYVTI*T
Rviridis R*******************SAAY**RPLYRIFFWLFVADCIFLGWLGAM*PAEGIYPTL*S
Bjaponic R*******************SSKY**RPLAKQFFWIFVAVCILLGYLGAQ*PPEGIYVIA*G
Rcapsula R*******************SGAY**RPKFRMWFWFLVLDFVVLTWVGAM*PTEYPYDWI*S
Rsphaero R*******************SGRY**RPMFKIYFWLLAADFVILTWVGAQ*QTTFPYDWI*S
Pdenitri R*******************SGQY**RPLFKWWFWLLAVDFVVLMWVGAM*PAEGIYPYI*A
Chromvin k*******************smry*kgpifkwatgifvvsfvalawlgiq*pasdfytll*s

Rrubrum  QLATIYYFLHFLVITPLVGWFEKPKPLPVSISSPVTTQA****************
Rviridis QVGTVWYFAHFLVIVPALGYFEKPKPLPESISAAVLEAHSRPSLLARLINR****
Bjaponic RVLTVCYFAYFLIVLPLLSRIETPRPVPNSISEAILAKGGKAVASVAIAL*****
Rcapsula LIASTYWFAYFLVILPLLGATEKPEPIPASIEEDFNSHYGNPAE***********
Rsphaero LIASAYWFAYFLVILPILGAIEKPVAPPATIEEDFNAHYSPATGGTKTVVAE***
Pdenitri LAGSAYWFAYFLIILPLLGIIEKPDAMPQTIEEDFNAHYGPETHPAE********
Chromvin qiftvlyfayfllmpiyss ldktkpflrg