Bibliography- Ed Berry

Bibliography- Ed Berry

Cobessi D, Huang LS, Ban M, Pon NG, Daldal F, Berry EA. Related Articles, Protein, Structure: The 2.6 A resolution structure of Rhodobacter capsulatus bacterioferritin with metal-free dinuclear site and heme iron in a crystallographic 'special position'.
Acta Crystallogr D Biol Crystallogr. 2002 Jan;58(Pt 1):29-38.
PMID: 11752777 [PubMed - indexed for MEDLINE]

Zhang Z, Berry EA, Huang LS, Kim SH. Related Articles: Mitochondrial cytochrome bc1 complex.
Subcell Biochem. 2000;35:541-80. Review. No abstract available.
PMID: 11192733 [PubMed - indexed for MEDLINE]

Horvath A, Berry EA, Huang LS, Maslov DA. Related Articles: Leishmania tarentolae: a parallel isolation of cytochrome bc(1) and cytochrome c oxidase.
Exp Parasitol. 2000 Nov;96(3):160-7.
PMID: 11162366 [PubMed - indexed for MEDLINE]

Lee SY, Cho HS, Pelton JG, Yan D, Henderson RK, King DS, Huang L, Kustu S, Berry EA, Wemmer DE. Related Articles, Protein, Structure: Crystal structure of an activated response regulator bound to its target.
Nat Struct Biol. 2001 Jan;8(1):52-6.
PMID: 11135671 [PubMed - indexed for MEDLINE]

Berry EA, Zhang Z, Bellamy HD, Huang L. Related Articles: Crystallographic location of two Zn(2+)-binding sites in the avian cytochrome bc(1) complex.
Biochim Biophys Acta. 2000 Aug 15;1459(2-3):440-8.
PMID: 11004461 [PubMed - indexed for MEDLINE]

Berry EA, Guergova-Kuras M, Huang LS, Crofts AR. Related Articles: Structure and function of cytochrome bc complexes.
Annu Rev Biochem. 2000;69:1005-75. Review.
PMID: 10966481 [PubMed - indexed for MEDLINE]

Berry EA, Zhang Z, Huang LS, Kim SH. Related Articles: Structures of quinone-binding sites in bc complexes: functional implications.
Biochem Soc Trans. 1999 Aug;27(4):565-72. Review. No abstract available.
PMID: 10917643 [PubMed - indexed for MEDLINE]

Chi YI, Huang LS, Zhang Z, Fernandez-Velasco JG, Berry EA. Related Articles: X-ray structure of a truncated form of cytochrome f from chlamydomonas reinhardtii.
Biochemistry. 2000 Jul 4;39(26):7689-701.
PMID: 10869174 [PubMed - indexed for MEDLINE]

McFadden DC, Tomavo S, Berry EA, Boothroyd JC. Related Articles, Nucleotide, Protein: Characterization of cytochrome b from Toxoplasma gondii and Q(o) domain mutations as a mechanism of atovaquone-resistance.
Mol Biochem Parasitol. 2000 Apr 30;108(1):1-12.
PMID: 10802314 [PubMed - indexed for MEDLINE]

Horvath A, Berry EA, Maslov DA.: Translation of the edited mRNA for cytochrome b in trypanosome mitochondria.
Science. 2000 Mar 3;287(5458):1639-40.
PMID: 10698736; UI: 20165033

Crofts AR, Hong S, Zhang Z, Berry EA.: Physicochemical aspects of the movement of the rieske iron sulfur protein during quinol oxidation by the bc(1) complex from mitochondria and photosynthetic bacteria.
Biochemistry. 1999 Nov 30;38(48):15827-39.
PMID: 10625447; UI: 20093125

Crofts AR, Barquera B, Gennis RB, Kuras R, Guergova-Kuras M, Berry EA.: Mechanism of ubiquinol oxidation by the bc(1) complex: different domains of the quinol binding pocket and their role in the mechanism and binding of inhibitors.
Biochemistry. 1999 Nov 30;38(48):15807-26.
PMID: 10625446; UI: 20093124

Crofts AR, Guergova-Kuras M, Huang L, Kuras R, Zhang Z, Berry EA.: Mechanism of ubiquinol oxidation by the bc(1) complex: role of the iron sulfur protein and its mobility.
Biochemistry. 1999 Nov 30;38(48):15791-806.
PMID: 10625445; UI: 20093123

Berry EA, Huang LS, Zhang Z, Kim SH.: Structure of the avian mitochondrial cytochrome bc1 complex.
J Bioenerg Biomembr. 1999 Jun;31(3):177-90. Review.
PMID: 10591524; UI: 20057524

Izrailev S, Crofts AR, Berry EA, Schulten K.: Steered molecular dynamics simulation of the Rieske subunit motion in the cytochrome bc(1) complex.
Biophys J. 1999 Oct;77(4):1753-68.
PMID: 10512801; UI: 99444110

Crofts AR, Hong S, Ugulava N, Barquera B, Gennis R, Guergova-Kuras M, Berry EA.: Pathways for proton release during ubihydroquinone oxidation by the bc(1) complex.
Proc Natl Acad Sci U S A. 1999 Aug 31;96(18):10021-6.
PMID: 10468555; UI: 99398655

Berry EA, Zhang Z, Huang LS, Kim SH. Related Articles: Structures of quinone-binding sites in bc complexes: functional implications.
Biochem Soc Trans. 1999 Aug;27(4):565-72. Review. No abstract available.
PMID: 10917643 [PubMed - indexed for MEDLINE]

10. Saribas, A.S., Valkova-Valchanova, M., Tokito, M.K., Zhang, Z., Berry, E.A., and Daldal ,F., (1998): Interactions between the cytochrome b, cytochrome c1, and Fe-S protein subunits at the ubihydroquinone oxidation site of the bc1 complex of Rhodobacter capsulatus.
Biochemistry. 1998 Jun 2; 37(22): 8105-8114.
PMID: 9609705; UI: 98272685.

11. Zhang, Z., Huang, L.-S., Shulmeister, V.M., Chi, Y.I., Kim, K.K., Hung, L.-W., Crofts, A.R., Berry, E.A., and Kim, S.-H. (1998): Electron transfer by domain movement in cytochrome bc1.
Nature. 1998 Apr 16; 392(6677): 677-684.
PMID: 9565029; UI: 98224700.

12. Berry EA; Shulmeister VM; Huang LS; Kim SH.

A new crystal form of bovine heart ubiquinol:cytochrome c oxidoreductase -

determination of space group and unit-cell parameters.

Acta Crystallographica section D-Biological Crystallography, 1995 Mar 1, V51 Mar:235-239.

ViewAbstract

13 Garcia-Horsman JA, et al.: A novel cytochrome c oxidase from Rhodobacter sphaeroides that lacks CuA.
Biochemistry. 1994 Mar 15; 33(10): 3113-3119.
PMID: 8130226; UI: 94176507.

14.Perkins GA, et al.: Characterization of the conformational change in the M1 and M2 substates of bacteriorhodopsin by the combined use of visible and infrared spectroscopy.
J Struct Biol. 1992 Sep; 109(2): 142-151.
PMID: 1288615; UI: 93168508.

15.Berry EA, et al.: X-ray diffraction by crystals of beef heart ubiquinol: cytochrome c oxidoreductase.
J Mol Biol. 1992 Apr 20; 224(4): 1161-1166.
PMID: 1314906; UI: 92235850.

16.Berry EA, et al.: Ubiquinol-cytochrome c oxidoreductase of higher plants. Isolation and characterization of the bc1 complex from potato tuber mitochondria.
J Biol Chem. 1991 May 15; 266(14): 9064-9077.
PMID: 1851164; UI: 91225010.

17.Huang LS, et al.: Purification and characterization of the proton translocating plasma membrane ATPase of red beet storage tissue.
Biochim Biophys Acta. 1990 Jun 19; 1039(2): 241-252.
PMID: 2142002; UI: 90304197.

18.Crofts, A., Robinson, H., Andrews, K., van Doren, S., and Berry, E. (1988): Catalytic Sites for Reduction and Oxidation of Quinones. In Cytochrome Systems,
(Papa,S. et al. eds.) Plenum Press, N.Y. pp. 617-624.

19.Berry EA, et al.: Simultaneous determination of hemes a, b, and c from pyridine hemochrome spectra.
Anal Biochem. 1987 Feb 15; 161(1): 1-15.
PMID: 3578775; UI: 87210999.

20.Berry EA, et al.: Isolation of ubiquinol oxidase from Paracoccus denitrificans.
Methods Enzymol. 1986; 126: 305-316. No abstract available.
PMID: 2856133; UI: 90173834.

21. Berry, E.A. and Trumpower, B.L. (1985): Pathways of Electrons and Protons Through the Cytochrome bc1 complex of the Mitochondrial Respiratory Chain.
In "Coenzyme Q" (G. Lenaz, Ed.), Wiley & Sons, 365-389.

22.Berry EA, et al.: Isolation of ubiquinol oxidase from Paracoccus denitrificans and resolution into cytochrome bc1 and cytochrome c-aa3 complexes.
J Biol Chem. 1985 Feb 25; 260(4): 2458-2467.
PMID: 2982819; UI: 85130990.

23.Berry EA, et al. [See Related Articles]: Measurement of the electrochemical proton gradient in submitochondrial particles.
J Biol Chem. 1983 Feb 10; 258(3): 1474-1486.
PMID: 6296098; UI: 83108932.