Your query has been submitted, please wait for results
BLASTP 1.4.11 [24-Nov-97] [Build 24-Nov-97]
Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol.
Biol. 215:403-10.
Query= tmpseq_1
(137 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
277,055 sequences; 82,859,678 total letters.
Searching..................................................done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
sp|P00094|CY2_RHOCA CYTOCHROME C2 PRECURSOR /pir||CCRF2C... 698 8.1e-87 1
pdb|1C2R|A Rhodobacter capsulatus /pdb|1C2R|B R... 605 4.0e-74 1
sp|P07625|C551_ERYSP CYTOCHROME C-551 (C551) /pir||CCBC5E... 193 6.9e-38 2
sp|Q00499|C550_THIVE CYTOCHROME C-550 PRECURSOR (C550) /p... 239 2.1e-35 2
sp|P00096|C550_PARDE CYTOCHROME C-550 PRECURSOR (C550) (C... 233 5.3e-35 2
sp|P80288|C550_THIPA CYTOCHROME C-550 (C550) /pir||S41108... 228 1.5e-34 2
pdb|1COT| Cytochrome C2 (Formerly Cytochrome ... 224 6.5e-34 2
pdb|155C| Cytochrome C550 130 5.9e-30 3
sp|P00095|CY2_RHOSH CYTOCHROME C2 PRECURSOR /gi|151896 (... 119 7.3e-26 3
pir||CCRF2S cytochrome c2 precursor - Rhodobacte... 119 7.3e-26 3
pdb|1CXA| Cytochrome C2 Complexed With Imidaz... 119 3.2e-24 3
sp|P00092|CY2_RHORU CYTOCHROME C2 PRECURSOR /pir||CCQF2R... 183 1.5e-20 2
pdb|2C2C| Cytochrome c2 (Oxidized) /pdb|3C2C|... 176 1.3e-19 2
sp|P12832|C550_AQUIT CYTOCHROME C-550 (C550) /pir||S00034... 157 8.6e-17 2
sp|P00090|CY21_RHOPA CYTOCHROME C2 /pir||CCRF2P cytochrom... 132 1.5e-16 4
sp|P00091|CY22_RHOPA CYTOCHROME C2 /pir||CCRF7P cytochrom... 130 1.3e-14 4
sp|P00093|CY2_RHOPH CYTOCHROME C2 /pir||CCQF2P cytochrom... 146 2.9e-13 3
sp|P00081|CY2_AGRTC CYTOCHROME C2 /pir||CCAG2 cytochrome... 111 5.6e-12 2
sp|Q45233|C550_BRAJA CYTOCHROME C-550 PRECURSOR (C550) /p... 85 1.1e-11 3
gnl|PID|e324310 (X79242) cytochrome [Paracoccus deni... 113 1.6e-10 3
sp|P00083|CY2_RHOVI CYTOCHROME C2 PRECURSOR /pir||CCRF2V... 78 2.4e-10 3
pir||B40638 isocytochrome c2 - Rhodobacter sphae... 93 6.3e-10 2
pdb|1CRY| Cytochrome C2 63 1.2e-08 3
gi|1072057 (U35437) similar to CycY of Rhodobac... 82 1.7e-08 2
sp|P00085|C550_NITWI CYTOCHROME C-550 (C550) /pir||CCNA5A... 67 2.3e-08 3
sp|P23021|C550_THINO CYTOCHROME C-550 (C550) 104 2.8e-08 2
pir||JU0381 cytochrome c550 - Thiobacillus novellus 104 2.9e-08 2
sp|P04657|CYC1_DROME CYTOCHROME C-1 /pir||B23058 cytochro... 80 1.6e-07 4
sp|P00043|CYC_TORHA CYTOCHROME C /pir||CCDBK cytochrome ... 80 1.1e-06 3
sp|P00005|CYC_EQUAS CYTOCHROME C /pir||CCHOD cytochrome ... 78 1.1e-06 4
sp|P00082|CY2_RHOVA CYTOCHROME C2 /pir||CCRD2 cytochrome... 70 1.2e-06 3
sp|P00089|CY22_RHOFU CYTOCHROME C2, ISO-2 /pir||CCQFF2 cy... 66 1.3e-06 4
sp|P00038|CYC_APIME CYTOCHROME C /pir||CCHB cytochrome c... 78 1.3e-06 4
sp|P12831|CYC_BOEPE CYTOCHROME C /pir||B25506 cytochrome... 75 1.3e-06 4
bbs|128019 cytochrome c [Alligator mississippie... 78 1.5e-06 4
sp|P00012|CYC_MIRLE CYTOCHROME C /pir||CCSLE cytochrome ... 78 1.5e-06 4
sp|P00007|CYC_HIPAM CYTOCHROME C /pir||CCHP cytochrome c... 78 1.5e-06 4
sp|P00011|CYC_CANFA CYTOCHROME C /pir||CCDG cytochrome c... 78 1.5e-06 4
sp|P00006|CYC_BOVIN CYTOCHROME C /pir||CCPG cytochrome c... 78 1.5e-06 4
sp|P00004|CYC_HORSE CYTOCHROME C /pir||CCHO cytochrome c... 77 1.5e-06 4
pdb|1HRC| Cytochrome C /pdb|1CRC|A Equus caba... 77 1.6e-06 4
sp|P00039|CYC_MANSE CYTOCHROME C 74 1.8e-06 4
prf||711086A cytochrome c [Equus burchelli] 76 2.0e-06 4
sp|P00028|CYC_ENTTR CYTOCHROME C /pir||CCLM cytochrome c... 74 2.7e-06 4
bbs|170137 cytochrome c-550 [Magnetospirillum m... 63 3.0e-06 3
sp|P00026|CYC_CYPCA CYTOCHROME C, ISO-1 AND ISO-2 /pir||... 71 3.4e-06 4
pir||CCFFCM cytochrome c - Mediterranean fruit f... 71 4.1e-06 4
sp|P00034|CYC2_DROME CYTOCHROME C-2 /pir||CCFFDM cytochro... 71 4.4e-06 4
sp|P10715|CYC2_RAT CYTOCHROME C, TESTIS-SPECIFIC /pir||... 78 5.5e-06 3
bbs|163158 apocytochrome c [horses, heart, Pept... 75 6.3e-06 4
sp|P00013|CYC_MINSC CYTOCHROME C /pir||CCBTS cytochrome ... 78 8.4e-06 4
sp|P00078|CYC_CRIFA CYTOCHROME C /pir||CCCRCF cytochrome... 67 9.7e-06 3
sp|P00040|CYC_SCHGR CYTOCHROME C /pir||CCLQ cytochrome c... 78 9.8e-06 4
sp|P00014|CYC_MACGI CYTOCHROME C /pir||CCKGG cytochrome ... 75 1.1e-05 4
prf||1011182A cytochrome c [Musca sp.] 67 1.3e-05 4
sp|P00088|CY22_RHOMO CYTOCHROME C2, ISO-2 /pir||CCQFM2 cy... 68 1.3e-05 3
sp|P00036|CYC_LUCCU CYTOCHROME C /pir||CCHFGB cytochrome... 70 1.7e-05 4
sp|P00015|CYC2_MOUSE CYTOCHROME C, TESTIS-SPECIFIC /pir||... 78 1.8e-05 3
prf||671050A cytochrome c [Rana catesbeiana] 74 2.0e-05 4
sp|P00017|CYC_APTPA CYTOCHROME C /pir||CCPN cytochrome c... 72 2.0e-05 4
sp|P00010|CYC_ESCGI CYTOCHROME C /pir||CCGW cytochrome c... 69 2.0e-05 4
prf||720975A cytochrome c [Crithidia oncopelti] 62 2.2e-05 3
sp|P00077|CYC_CRION CYTOCHROME C /pir||CCCRCO cytochrome... 62 2.3e-05 3
sp|P00024|CYC_RANCA CYTOCHROME C /pir||CCFG cytochrome c... 74 2.6e-05 4
sp|P00020|CYC_ANAPL CYTOCHROME C /pir||CCDK cytochrome c... 70 2.6e-05 4
sp|P00025|CYC_KATPE CYTOCHROME C /pir||CCBN cytochrome c... 62 3.3e-05 4
sp|P00002|CYC_MACMU CYTOCHROME C /pir||CCMQR cytochrome ... 69 3.5e-05 4
pir||C04604 cytochrome c - guinea pig (tentative... 70 3.5e-05 4
pir||CCTK cytochrome c - turkey (tentative seq... 70 3.5e-05 4
sp|P00021|CYC_COLLI CYTOCHROME C /pir||CCPY cytochrome c... 70 3.5e-05 4
sp|P00087|CY21_RHOMO CYTOCHROME C2, ISO-1 /pir||CCQF2M cy... 62 3.6e-05 3
sp|P00016|CYC_CHICK CYTOCHROME C /pir||CCCH cytochrome c... 70 3.7e-05 4
sp|P00009|CYC_MOUSE CYTOCHROME C, SOMATIC /pir||CCMS cyt... 70 3.7e-05 4
pir||S30377 Cytochrome c - American alligator 78 4.0e-05 3
pdb|1HRO|A Rhodopila globiformis /pdb|1HRO|B Rh... 88 4.1e-05 2
pir||CCCZ cytochrome c - chimpanzee (tentative... 69 4.7e-05 4
sp|P00008|CYC_RABIT CYTOCHROME C /pir||CCRB cytochrome c... 69 4.7e-05 4
sp|P00022|CYC_CHESE CYTOCHROME C /pir||CCST cytochrome c... 66 4.7e-05 4
sp|P00027|CYC_SQUSU CYTOCHROME C /pir||CCDF cytochrome c... 66 4.7e-05 4
sp|P00001|CYC_HUMAN CYTOCHROME C /pir||CCHU cytochrome c... 69 4.9e-05 4
sp|P19974|CYC_CAEEL CYTOCHROME C /pir||S13048 cytochrome... 78 6.9e-05 3
prf||1011182B cytochrome c [Musca sp.] 64 7.2e-05 4
prf||630486A cytochrome c [Thunnus thynnus] 62 7.8e-05 4
sp|P00032|CYC_HELAS CYTOCHROME C /pir||CCHA cytochrome c... 72 8.3e-05 4
pdb|3CYT|O Thunnus alalunga /pdb|3CYT|I Thunnus... 62 8.3e-05 4
sp|P00018|CYC_DRONO CYTOCHROME C /pir||CCEU cytochrome c... 66 0.00011 4
sp|Q41346|CYC_STELP CYTOCHROME C /gi|440586 (Z21499) mit... 74 0.00012 3
sp|P00080|CY2_RHOGL CYTOCHROME C2 /pir||CCRF2G cytochrom... 84 0.00014 2
sp|P00029|CYC_ASTRU CYTOCHROME C /pir||CCSF cytochrome c... 70 0.00014 4
bbs|163159 apocytochrome c [chickens, heart, Pe... 68 0.00015 4
sp|P00019|CYC_STRCA CYTOCHROME C /pir||CCOS cytochrome c... 65 0.00015 4
sp|P00084|CY2_RHOAC CYTOCHROME C2 /pir||CCRF2A cytochrom... 60 0.00015 3
pir||A61490 cytochrome c - Aspergillus niger 61 0.00015 4
gnl|PID|e328729 (X79242) cytochrome [Paracoccus deni... 95 0.00016 1
sp|P00035|CYC_HAEIR CYTOCHROME C /pir||CCFHHF cytochrome... 62 0.00017 4
pir||S41568 cytochrome c - Emericella nidulans 64 0.00020 4
sp|P00069|CYC_GUIAB CYTOCHROME C /pir||CCNG cytochrome c... 62 0.00021 4
sp|P00023|CYC_CROAT CYTOCHROME C /pir||CCRS cytochrome c... 60 0.00034 4
gi|159497 (M11382) cytochrome C [Manduca sexta] 74 0.00035 2
sp|P00086|CY21_RHOFU CYTOCHROME C2, ISO-1 /pir||CCQF2F cy... 61 0.00036 3
sp|P00094|CY2_RHOCA CYTOCHROME C2 PRECURSOR pir||CCRF2C cytochrome c2
precursor - Rhodobacter capsulatus gi|151898 (M12776) cytochrome c2
precursor [Rhodobacter capsulatus] prf||1205339A cytochrome c2
[Rhodobacter capsulatus]
Length = 137
Score = 698 (316.5 bits), Expect = 8.1e-87, P = 8.1e-87
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MKISLTAATVAALVLAAPAFAGDAAKGEKEFNKCKTCHSIIAPDGTEIVKGAKTGPNLYG 60
MKISLTAATVAALVLAAPAFAGDAAKGEKEFNKCKTCHSIIAPDGTEIVKGAKTGPNLYG
Sbjct: 1 MKISLTAATVAALVLAAPAFAGDAAKGEKEFNKCKTCHSIIAPDGTEIVKGAKTGPNLYG 60
Query: 61 VVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTGMAFK 120
VVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTGMAFK
Sbjct: 61 VVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTGMAFK 120
Query: 121 LAKGGEDVAAYLASVVK 137
LAKGGEDVAAYLASVVK
Sbjct: 121 LAKGGEDVAAYLASVVK 137
pdb|1C2R|A Rhodobacter capsulatus pdb|1C2R|B Rhodobacter capsulatus
Length = 116
Score = 605 (274.3 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 22 GDAAKGEKEFNKCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVAL 81
GDAAKGEKEFNKCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVAL
Sbjct: 1 GDAAKGEKEFNKCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVAL 60
Query: 82 GASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTGMAFKLAKGGEDVAAYLASVVK 137
GASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTGMAFKLAKGGEDVAAYLASVVK
Sbjct: 61 GASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTGMAFKLAKGGEDVAAYLASVVK 116
sp|P07625|C551_ERYSP CYTOCHROME C-551 (C551) pir||CCBC5E cytochrome
c551 - Erythrobacter sp prf||1305285A cytochrome c555
[Erythrobacter sp.]
Length = 119
Score = 180 (81.6 bits), Expect = 6.9e-38, Sum P(2) = 6.9e-38
Identities = 32/47 (68%), Positives = 37/47 (78%)
Query: 22 GDAAKGEKEFNKCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGT 68
GD GEK FNKCK+CH I++ G EIVKG +TGPNLYGV+GR AGT
Sbjct: 2 GDIEAGEKAFNKCKSCHQIVSDAGEEIVKGGRTGPNLYGVLGRQAGT 48
Score = 193 (87.5 bits), Expect = 6.9e-38, Sum P(2) = 6.9e-38
Identities = 36/65 (55%), Positives = 46/65 (70%)
Query: 71 EFKYKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTGMAFKLAKGGEDVAA 130
+F+Y D +VA G +G W ++ YV DP AFL+ LDD KAK+ MA+KL GGED+AA
Sbjct: 50 DFRYGDDLVAAGEAGLVWDADNFVEYVTDPRAFLRAYLDDSKAKSKMAYKLRSGGEDIAA 109
Query: 131 YLASV 135
YLASV
Sbjct: 110 YLASV 114
sp|Q00499|C550_THIVE CYTOCHROME C-550 PRECURSOR (C550) pir||S23630
cytochrome c550 precursor - Thiobacillus versutus gi|48295 (X62808)
cytochrome c(550) [Thiobacillus versutus]
Length = 154
Score = 239 (108.4 bits), Expect = 2.1e-35, Sum P(2) = 2.1e-35
Identities = 46/68 (67%), Positives = 51/68 (75%)
Query: 12 ALVLAAPAFAGDAAKGEKEFNKCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPE 71
+L L A A GDAAKGEKEFNKCK CH + APDGT+IVKG KTGPNLYGVVGR +
Sbjct: 13 SLALPAVAQEGDAAKGEKEFNKCKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEG 72
Query: 72 FKYKDSIV 79
FKY D I+
Sbjct: 73 FKYGDGIL 80
Score = 117 (53.0 bits), Expect = 2.1e-35, Sum P(2) = 2.1e-35
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 88 WTEEDIATYVKDPGAFLKEKLDDKKAKTGMAFKLAKGGEDVAAYLA 133
W+E D+ YV DP +L EK D AKT M FKL K DV A+LA
Sbjct: 91 WSEADLIEYVTDPKPWLVEKTGDSAAKTKMTFKLGKNQADVVAFLA 136
sp|P00096|C550_PARDE CYTOCHROME C-550 PRECURSOR (C550) (CYTOCHROME C2)
pir||CCPC50 cytochrome c550 precursor - Paracoccus denitrificans
gi|45478 (Y07533) cytochrome-c oxidase [Paracoccus denitrificans]
gi|150574 (M27304) cytochrome c550 [Paracoccus denitrificans]
Length = 155
Score = 233 (105.6 bits), Expect = 5.3e-35, Sum P(2) = 5.3e-35
Identities = 45/67 (67%), Positives = 50/67 (74%)
Query: 13 LVLAAPAFAGDAAKGEKEFNKCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEF 72
L L A A GDAAKGEKEFNKCK CH I APDGT+I+KG KTGPNLYGVVGR + F
Sbjct: 14 LALPAAAQDGDAAKGEKEFNKCKACHMIQAPDGTDIIKGGKTGPNLYGVVGRKIASEEGF 73
Query: 73 KYKDSIV 79
KY + I+
Sbjct: 74 KYGEGIL 80
Score = 120 (54.4 bits), Expect = 5.3e-35, Sum P(2) = 5.3e-35
Identities = 24/46 (52%), Positives = 29/46 (63%)
Query: 88 WTEEDIATYVKDPGAFLKEKLDDKKAKTGMAFKLAKGGEDVAAYLA 133
WTE D+ YV DP +L + DDK AKT M FK+ K DV A+LA
Sbjct: 91 WTEADLIEYVTDPKPWLVKMTDDKGAKTKMTFKMGKNQADVVAFLA 136
sp|P80288|C550_THIPA CYTOCHROME C-550 (C550) pir||S41108 cytochrome
c-550 - Thiosphaera pantotropha prf||2006251A cytochrome c550
[Paracoccus denitrificans]
Length = 134
Score = 228 (103.4 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 42/58 (72%), Positives = 46/58 (79%)
Query: 22 GDAAKGEKEFNKCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIV 79
GDAAKGEKEFNKCK CH + APDGT+IVKG KTGPNLYGVVGR + FKY D I+
Sbjct: 3 GDAAKGEKEFNKCKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASEEGFKYGDGIL 60
Score = 121 (54.9 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 25/46 (54%), Positives = 28/46 (60%)
Query: 88 WTEEDIATYVKDPGAFLKEKLDDKKAKTGMAFKLAKGGEDVAAYLA 133
WTE D+ YV DP +L EK D AKT M FKL K DV A+LA
Sbjct: 71 WTEADLIEYVTDPKPWLVEKTGDSAAKTKMTFKLGKNQADVVAFLA 116
pdb|1COT| Cytochrome C2 (Formerly Cytochrome C550)
Length = 129
Score = 224 (101.6 bits), Expect = 6.5e-34, Sum P(2) = 6.5e-34
Identities = 41/58 (70%), Positives = 46/58 (79%)
Query: 22 GDAAKGEKEFNKCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIV 79
GDAAKGEKEFNKCK CH I APDGT+I+KG KTGPNLYGVVGR + FKY + I+
Sbjct: 3 GDAAKGEKEFNKCKACHMIQAPDGTDIIKGGKTGPNLYGVVGRKIASEEGFKYGEGIL 60
Score = 120 (54.4 bits), Expect = 6.5e-34, Sum P(2) = 6.5e-34
Identities = 24/46 (52%), Positives = 29/46 (63%)
Query: 88 WTEEDIATYVKDPGAFLKEKLDDKKAKTGMAFKLAKGGEDVAAYLA 133
WTE D+ YV DP +L + DDK AKT M FK+ K DV A+LA
Sbjct: 71 WTEADLIEYVTDPKPWLVKMTDDKGAKTKMTFKMGKNQADVVAFLA 116
pdb|155C| Cytochrome C550
Length = 135
Score = 130 (58.9 bits), Expect = 5.9e-30, Sum P(3) = 5.9e-30
Identities = 24/30 (80%), Positives = 25/30 (83%)
Query: 22 GDAAKGEKEFNKCKTCHSIIAPDGTEIVKG 51
GDAAKGEKEFNKCK CH I APDGT+I G
Sbjct: 4 GDAAKGEKEFNKCKACHMIQAPDGTDIKGG 33
Score = 96 (43.5 bits), Expect = 5.9e-30, Sum P(3) = 5.9e-30
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 49 VKGAKTGPNLYGVVGRTAGTYPEFKYKDSIV 79
+KG KTGPNLYGVVGR + FKY + I+
Sbjct: 30 IKGGKTGPNLYGVVGRKIASEEGFKYGEGIL 60
Score = 118 (53.5 bits), Expect = 5.9e-30, Sum P(3) = 5.9e-30
Identities = 23/46 (50%), Positives = 29/46 (63%)
Query: 88 WTEEDIATYVKDPGAFLKEKLDDKKAKTGMAFKLAKGGEDVAAYLA 133
WTE ++ YV DP +K+ DDK AKT M FK+ K DV A+LA
Sbjct: 71 WTEANLIEYVTDPKPLVKKMTDDKGAKTKMTFKMGKNQADVVAFLA 116
sp|P00095|CY2_RHOSH CYTOCHROME C2 PRECURSOR gi|151896 (M14501)
cytochrome c-2 precursor [Rhodobacter sphaeroides]
Length = 145
Score = 93 (42.2 bits), Expect = 7.3e-26, Sum P(3) = 7.3e-26
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 2 KISLTAATVAALVLAAPAFAGDAAKGEKEFNKCKTCHSIIAPDGTEI 48
++ AA A L A A GD G K FN+C+TCH I+ GT I
Sbjct: 4 QVKALAAIAAFAALPALAQEGDPEAGAKAFNQCQTCHVIVDESGTTI 50
Score = 102 (46.2 bits), Expect = 7.3e-26, Sum P(3) = 7.3e-26
Identities = 19/24 (79%), Positives = 21/24 (87%)
Query: 50 KGAKTGPNLYGVVGRTAGTYPEFK 73
+ AKTGPNLYGVVGRTAGT +FK
Sbjct: 53 RNAKTGPNLYGVVGRTAGTQADFK 76
Score = 119 (54.0 bits), Expect = 7.3e-26, Sum P(3) = 7.3e-26
Identities = 25/50 (50%), Positives = 28/50 (56%)
Query: 74 YKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTGMAFKLAK 123
Y + + GA G AW EE YV+DP FLKE D KAK M FKL K
Sbjct: 78 YGEGMKEAGAKGLAWDEEHFVQYVQDPTKFLKEYTGDAKAKGKMTFKLKK 127
pir||CCRF2S cytochrome c2 precursor - Rhodobacter sphaeroides gi|151892
(M64777) cytochrome c-2 [Rhodobacter sphaeroides]
Length = 145
Score = 93 (42.2 bits), Expect = 7.3e-26, Sum P(3) = 7.3e-26
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 2 KISLTAATVAALVLAAPAFAGDAAKGEKEFNKCKTCHSIIAPDGTEI 48
++ AA A L A A GD G K FN+C+TCH I+ GT I
Sbjct: 4 QVKALAAIAAFAALPALAQEGDPEAGAKAFNQCQTCHVIVDDSGTTI 50
Score = 102 (46.2 bits), Expect = 7.3e-26, Sum P(3) = 7.3e-26
Identities = 19/24 (79%), Positives = 21/24 (87%)
Query: 50 KGAKTGPNLYGVVGRTAGTYPEFK 73
+ AKTGPNLYGVVGRTAGT +FK
Sbjct: 53 RNAKTGPNLYGVVGRTAGTQADFK 76
Score = 119 (54.0 bits), Expect = 7.3e-26, Sum P(3) = 7.3e-26
Identities = 25/50 (50%), Positives = 28/50 (56%)
Query: 74 YKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTGMAFKLAK 123
Y + + GA G AW EE YV+DP FLKE D KAK M FKL K
Sbjct: 78 YGEGMKEAGAKGLAWDEEHFVQYVQDPTKFLKEYTGDAKAKGKMTFKLKK 127
pdb|1CXA| Cytochrome C2 Complexed With Imidazole pdb|1CXC| Mol_id:
1; Molecule: Cytochrome C2; Chain: Null; pdb|2CXB|A Rhodobacter
sphaeroides pdb|2CXB|B Rhodobacter sphaeroides
Length = 124
Score = 79 (35.8 bits), Expect = 3.2e-24, Sum P(3) = 3.2e-24
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 22 GDAAKGEKEFNKCKTCHSIIAPDGTEI 48
GD G K FN+C+TCH I+ GT I
Sbjct: 3 GDPEAGAKAFNQCQTCHVIVDDSGTTI 29
Score = 102 (46.2 bits), Expect = 3.2e-24, Sum P(3) = 3.2e-24
Identities = 19/24 (79%), Positives = 21/24 (87%)
Query: 50 KGAKTGPNLYGVVGRTAGTYPEFK 73
+ AKTGPNLYGVVGRTAGT +FK
Sbjct: 32 RNAKTGPNLYGVVGRTAGTQADFK 55
Score = 119 (54.0 bits), Expect = 3.2e-24, Sum P(3) = 3.2e-24
Identities = 25/50 (50%), Positives = 28/50 (56%)
Query: 74 YKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTGMAFKLAK 123
Y + + GA G AW EE YV+DP FLKE D KAK M FKL K
Sbjct: 57 YGEGMKEAGAKGLAWDEEHFVQYVQDPTKFLKEYTGDAKAKGKMTFKLKK 106
sp|P00092|CY2_RHORU CYTOCHROME C2 PRECURSOR pir||CCQF2R cytochrome c2
precursor - Rhodospirillum rubrum gi|46379 (X17605) precursor
peptide (AA -23 to 112) [Rhodospirillum rubrum]
Length = 135
Score = 62 (28.1 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 12 ALVLAAPAFAGDAAKGEKEFNKCKTCHS 39
A A GDAA GEK KC CH+
Sbjct: 15 AFASGAALAEGDAAAGEKVSKKCLACHT 42
Score = 183 (83.0 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 36/74 (48%), Positives = 45/74 (60%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDKK 112
K GPNL+GV TA ++ Y +S + A G WTE ++A YVKDP AF+ EK D K
Sbjct: 50 KVGPNLFGVFENTAAHKDDYAYSESYTEMKAKGLTWTEANLAAYVKDPKAFVLEKSGDPK 109
Query: 113 AKTGMAFKLAKGGE 126
AK+ M FKL K E
Sbjct: 110 AKSKMTFKLTKDDE 123
pdb|2C2C| Cytochrome c2 (Oxidized) pdb|3C2C| Cytochrome c2 (Reduced)
Length = 112
Score = 61 (27.7 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 22 GDAAKGEKEFNKCKTCHS 39
GDAA GEK KC CH+
Sbjct: 2 GDAAAGEKVSKKCLACHT 19
Score = 176 (79.8 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 35/74 (47%), Positives = 44/74 (59%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDKK 112
K GPNL+GV TA + Y +S + A G WTE ++A YVK+P AF+ EK D K
Sbjct: 27 KVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVKNPKAFVLEKSGDPK 86
Query: 113 AKTGMAFKLAKGGE 126
AK+ M FKL K E
Sbjct: 87 AKSKMTFKLTKDDE 100
sp|P12832|C550_AQUIT CYTOCHROME C-550 (C550) pir||S00034 cytochrome
c550 - Aquaspirillum itersonii
Length = 111
Score = 59 (26.7 bits), Expect = 8.6e-17, Sum P(2) = 8.6e-17
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 22 GDAAKGEKEFNKCKTCHS 39
GDAAKG C TCHS
Sbjct: 1 GDAAKGANVAKSCGTCHS 18
Score = 157 (71.2 bits), Expect = 8.6e-17, Sum P(2) = 8.6e-17
Identities = 33/74 (44%), Positives = 38/74 (51%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDKK 112
K GPNL+G+ R G F Y S A A GFAW + Y+ DP AFL K D
Sbjct: 26 KQGPNLFGITTRGPGKAEGFNYSPSYKAAAAKGFAWDAATLQDYITDPTAFLSNKTGDAA 85
Query: 113 AKTGMAFKLAKGGE 126
A+ M FKLAK E
Sbjct: 86 ARDKMTFKLAKPDE 99
sp|P00090|CY21_RHOPA CYTOCHROME C2 pir||CCRF2P cytochrome c2 -
Rhodopseudomonas palustris (strain 2.1.6)
Length = 114
Score = 64 (29.0 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 23 DAAKGEKEFNKCKTCH 38
DAAKGE F +C TCH
Sbjct: 2 DAAKGEAVFKQCMTCH 17
Score = 132 (59.8 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 28/57 (49%), Positives = 34/57 (59%)
Query: 55 GPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDK 111
GP L GVVGR AGT F Y G +G WT+E+I Y+ DP A+LK+ L DK
Sbjct: 25 GPALGGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTQENIIAYLPDPNAYLKKFLTDK 81
Score = 33 (15.0 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 105 KEKLDDKKAKTGMAFKLA 122
K + D T M FKLA
Sbjct: 81 KGQADKATGSTKMTFKLA 98
Score = 36 (16.3 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 7/10 (70%), Positives = 10/10 (100%)
Query: 126 EDVAAYLASV 135
+DVAAYLA++
Sbjct: 104 KDVAAYLATL 113
sp|P00091|CY22_RHOPA CYTOCHROME C2 pir||CCRF7P cytochrome c2 -
Rhodopseudomonas palustris (strain 2.1.37)
Length = 114
Score = 53 (24.0 bits), Expect = 1.3e-14, Sum P(4) = 1.3e-14
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 23 DAAKGEKEFNKCKTCH 38
DA GE F +C TCH
Sbjct: 2 DAKAGEAVFKQCMTCH 17
Score = 130 (58.9 bits), Expect = 1.3e-14, Sum P(4) = 1.3e-14
Identities = 28/57 (49%), Positives = 33/57 (57%)
Query: 55 GPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDK 111
GP L GVVGR AGT F Y G +G WT ++I Y+ DP AFLK+ L DK
Sbjct: 25 GPALGGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIINYLNDPNAFLKKFLTDK 81
Score = 35 (15.9 bits), Expect = 1.3e-14, Sum P(4) = 1.3e-14
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 105 KEKLDDKKAKTGMAFKLA 122
K K D T M FKLA
Sbjct: 81 KGKADQAVGVTKMTFKLA 98
Score = 32 (14.5 bits), Expect = 1.3e-14, Sum P(4) = 1.3e-14
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 126 EDVAAYLASV 135
+DV AYLA++
Sbjct: 104 KDVVAYLATL 113
sp|P00093|CY2_RHOPH CYTOCHROME C2 pir||CCQF2P cytochrome c2 -
Rhodospirillum photometricum
Length = 113
Score = 38 (17.2 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 21 AGDAAKGEK 29
AGDAA GEK
Sbjct: 1 AGDAAVGEK 9
Score = 32 (14.5 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 4/8 (50%), Positives = 5/8 (62%)
Query: 33 KCKTCHSI 40
KC CH +
Sbjct: 14 KCTACHDL 21
Score = 146 (66.2 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDKK 112
K GP L+GV GRT GT+ + Y +G G W + + Y+ DP +++ K D K
Sbjct: 28 KVGPPLFGVFGRTTGTFAGYSYSPGYTVMGQKGHTWDDNALKAYLLDPKGYVQAKSGDPK 87
Query: 113 AKTGMAFKLAK 123
A + M F+L K
Sbjct: 88 ANSKMIFRLEK 98
sp|P00081|CY2_AGRTC CYTOCHROME C2 pir||CCAG2 cytochrome c2 -
Agrobacterium tumefaciens (strain II Chrys)
Length = 111
Score = 69 (31.3 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 22 GDAAKGEKEFNKCKTCHSI 40
GD AKGE F +C CH+I
Sbjct: 2 GDVAKGEAAFKRCSACHAI 20
Score = 111 (50.3 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDP 100
K GP L G++GRTAG P++ Y +++ G G WT +++ ++ P
Sbjct: 27 KVGPQLNGIIGRTAGGDPDYNYSNAMKKAGGEGLVWTPQELRDFLSAP 74
sp|Q45233|C550_BRAJA CYTOCHROME C-550 PRECURSOR (C550) pir||A56280
cytochrome c-550 precursor - Bradyrhizobium japonicum gi|643586
(L39642) cytochrome c550 [Bradyrhizobium japonicum]
Length = 136
Score = 85 (38.5 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 3 ISLTAATVAALVLAAPAFAGDAAKGEKEFNKCKTCHSI 40
++L A+ +++ A A DAA G+ FNKC CH+I
Sbjct: 10 VALAMTAAASTAMSSKAMAQDAAAGKTSFNKCLACHAI 47
Score = 70 (31.7 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDS 77
K GP L G+ GR +GT P++ Y D+
Sbjct: 54 KVGPELNGLNGRKSGTAPDYSYSDA 78
Score = 51 (23.1 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 84 SGFAWTEEDIATYVKDPGA 102
SG W E Y+KDP A
Sbjct: 82 SGITWDEATFKEYIKDPKA 100
gnl|PID|e324310 (X79242) cytochrome [Paracoccus denitrificans]
Length = 384
Score = 37 (16.8 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 8 ATVAALVLAAPAFAGDAAKGEK 29
+ +AA VLA PA A G +
Sbjct: 11 SVLAASVLAGPAMADKLGLGRE 32
Score = 58 (26.3 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 25 AKGEKEFNKCKTCHSI 40
A+GEK F KC CH +
Sbjct: 283 AEGEKVFKKCAACHKV 298
Score = 113 (51.2 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 54 TGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDPGAFLK 105
TGP L G+VGR AG FKY ++A+ + G W + + ++++P F+K
Sbjct: 306 TGPLLNGIVGRAAGDIEGFKYSKPLLAMASEGLVWDDASLHAFLENPKGFMK 357
sp|P00083|CY2_RHOVI CYTOCHROME C2 PRECURSOR pir||CCRF2V cytochrome c2
precursor - Rhodopseudomonas viridis gi|151875 (M59302) cytochrome
c-2 [Rhodopseudomonas viridis]
Length = 127
Score = 78 (35.4 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 17 APAFAGDAAKGEKEFNKCKTCHSI 40
APA A DAA GE+ F +C CHSI
Sbjct: 16 APAAAQDAASGEQVFKQCLVCHSI 39
Score = 59 (26.7 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDS 77
K GP L G+ GR +GT F Y D+
Sbjct: 46 KVGPVLNGLFGRHSGTIEGFAYSDA 70
Score = 58 (26.3 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 84 SGFAWTEEDIATYVKDPGA 102
SG WTEE Y++DP A
Sbjct: 74 SGITWTEEVFREYIRDPKA 92
pir||B40638 isocytochrome c2 - Rhodobacter sphaeroides gi|151901
(L02104) isocytochrome c2 [Rhodobacter sphaeroides] gi|986950
(L47326) cytochrome c [Rhodobacter sphaeroides]
Length = 144
Score = 73 (33.1 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 4 SLTAATVAALVLAAPAFAGDAAKGEKEFNKCKTCHSI 40
++ A +A A GD A GEK F KC+ CH I
Sbjct: 5 TILAGALALGAAQAAFAEGDPAAGEKAFRKCQACHQI 41
Score = 93 (42.2 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDP 100
KTGP L GV+GR A + F Y ++ A G W + T++ +P
Sbjct: 48 KTGPVLTGVIGRPAASIEGFSYSKTLTEAAADGLVWDHAALETFLANP 95
pdb|1CRY| Cytochrome C2
Length = 107
Score = 63 (28.6 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 23 DAAKGEKEFNKCKTCHSI 40
DAA GE+ F +C CHSI
Sbjct: 2 DAASGEQVFKQCLVCHSI 19
Score = 59 (26.7 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDS 77
K GP L G+ GR +GT F Y D+
Sbjct: 26 KVGPVLNGLFGRHSGTIEGFAYSDA 50
Score = 58 (26.3 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 84 SGFAWTEEDIATYVKDPGA 102
SG WTEE Y++DP A
Sbjct: 54 SGITWTEEVFREYIRDPKA 72
gi|1072057 (U35437) similar to CycY of Rhodobacter capsulatus, encoded
by GenBank Accession Number Z21797 [Rhodobacter sphaeroides]
Length = 115
Score = 72 (32.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 21 AGDAAKGEKEFNKCKTCHSIIAPDGT 46
A DAA G+K F KC CH + D T
Sbjct: 49 AADAAAGQKVFAKCAACHKVDGSDAT 74
Score = 82 (37.2 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 54 TGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDI 93
TGP+L GVV R + F Y D++VA A WT E++
Sbjct: 74 TGPHLNGVVDRAVASVGGFAYSDAMVAHAAEAPTWTLEEL 113
sp|P00085|C550_NITWI CYTOCHROME C-550 (C550) pir||CCNA5A cytochrome
c550 - Nitrobacter winogradskyi
Length = 109
Score = 67 (30.4 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 22 GDAAKGEKEFNKCKTCHSI 40
GD G+ FNKCK CH I
Sbjct: 1 GDVEAGKAAFNKCKACHEI 19
Score = 47 (21.3 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDSIVALG 82
K GP L G+ GR +G + Y + A G
Sbjct: 26 KVGPELDGLDGRHSGAVEGYAYSPANKASG 55
Score = 64 (29.0 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 83 ASGFAWTEEDIATYVKDPGA 102
ASG WTE + Y+KDP A
Sbjct: 53 ASGITWTEAEFKEYIKDPKA 72
sp|P23021|C550_THINO CYTOCHROME C-550 (C550)
Length = 107
Score = 48 (21.8 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 25 AKGEKEFNKCKTCHSI 40
AKG F KC CH++
Sbjct: 2 AKGANVFWKCMACHAV 17
Score = 104 (47.2 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDPGAFL 104
K GP L G++GR G+ F Y D++ A G WT E ++ Y+ +P ++
Sbjct: 24 KVGPELNGIIGRKMGSIEGFNYSDTLKEHNAKGDVWTAEILSQYLANPKGYM 75
pir||JU0381 cytochrome c550 - Thiobacillus novellus
Length = 109
Score = 48 (21.8 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 25 AKGEKEFNKCKTCHSI 40
AKG F KC CH++
Sbjct: 4 AKGANVFWKCMACHAV 19
Score = 104 (47.2 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDPGAFL 104
K GP L G++GR G+ F Y D++ A G WT E ++ Y+ +P ++
Sbjct: 26 KVGPELNGIIGRKMGSIEGFNYSDTLKEHNAKGDVWTAEILSQYLANPKGYM 77
sp|P04657|CYC1_DROME CYTOCHROME C-1 pir||B23058 cytochrome c DC3 -
fruit fly (Drosophila melanogaster) gi|7781 (X01761) cytochrome C
(DC3) (aa 1-104) [Drosophila melanogaster]
Length = 105
Score = 31 (14.1 bits), Expect = 1.6e-07, Sum P(4) = 1.6e-07
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 21 AGDAAKGEKEF 31
+GDA G+K F
Sbjct: 3 SGDAENGKKIF 13
Score = 30 (13.6 bits), Expect = 1.6e-07, Sum P(4) = 1.6e-07
Identities = 4/7 (57%), Positives = 5/7 (71%)
Query: 33 KCKTCHS 39
KC CH+
Sbjct: 16 KCAQCHT 22
Score = 80 (36.3 bits), Expect = 1.6e-07, Sum P(4) = 1.6e-07
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDSIVALGAS 84
K GPNL GVVGR GT +KY D+ + G +
Sbjct: 30 KVGPNLGGVVGRKCGTAAGYKYTDANIKKGVT 61
Score = 52 (23.6 bits), Expect = 1.6e-07, Sum P(4) = 1.6e-07
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 85 GFAWTEEDIATYVKDPGAFL 104
G WTE ++ Y+KDP ++
Sbjct: 59 GVTWTEGNLDEYLKDPKKYI 78
sp|P00043|CYC_TORHA CYTOCHROME C pir||CCDBK cytochrome c - yeast
(Torulaspora hansenii)
Length = 109
Score = 80 (36.3 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDS 77
K GPNL+GVVGRT+G F Y D+
Sbjct: 33 KVGPNLHGVVGRTSGQAQGFSYTDA 57
Score = 54 (24.5 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 85 GFAWTEEDIATYVKDPGAFL 104
G WTE+D++ Y+++P ++
Sbjct: 62 GVEWTEQDLSDYLENPKKYI 81
Score = 31 (14.1 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 120 KLAKGGEDVAAYLASVVK 137
K AK D+ YL K
Sbjct: 92 KKAKDRNDLITYLVKATK 109
sp|P00005|CYC_EQUAS CYTOCHROME C pir||CCHOD cytochrome c - donkey
(tentative sequence) pir||CCHOZ cytochrome c - common zebra
(tentative sequence)
Length = 104
Score = 31 (14.1 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 22 GDAAKGEKEF 31
GD KG+K F
Sbjct: 1 GDVEKGKKIF 10
Score = 33 (15.0 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 4/8 (50%), Positives = 6/8 (75%)
Query: 33 KCKTCHSI 40
KC CH++
Sbjct: 13 KCAQCHTV 20
Score = 78 (35.4 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDS 77
KTGPNL+G+ GR G P F Y D+
Sbjct: 27 KTGPNLHGLFGRKTGQAPGFSYTDA 51
Score = 44 (19.9 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 85 GFAWTEEDIATYVKDPGAFL 104
G W EE + Y+++P ++
Sbjct: 56 GITWKEETLMEYLENPKKYI 75
sp|P00082|CY2_RHOVA CYTOCHROME C2 pir||CCRD2 cytochrome c2 -
Rhodomicrobium vannielii
Length = 104
Score = 70 (31.7 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 21 AGDAAKGEKEFNKCKTCHSI 40
AGD KGE+ F +CK CH +
Sbjct: 1 AGDPVKGEQVFKQCKICHQV 20
Score = 51 (23.1 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 55 GPNLYGVVGRTAGTYPEFKYKDSI 78
GP V G+ AG P F Y D++
Sbjct: 29 GPEQNDVFGQKAGARPGFNYSDAM 52
Score = 43 (19.5 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 80 ALGASGFAWTEEDIATYVKDPGA 102
A+ SG W E + Y+++P A
Sbjct: 51 AMKNSGLTWDEATLDKYLENPKA 73
sp|P00089|CY22_RHOFU CYTOCHROME C2, ISO-2 pir||CCQFF2 cytochrome c2,
iso-2 - Rhodospirillum fulvum
Length = 96
Score = 44 (19.9 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 31 FNKCKTCHSIIA 42
F CK CHS+ A
Sbjct: 7 FGMCKACHSVEA 18
Score = 66 (29.9 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 55 GPNLYGVVGRTAGTYPEFKYKD 76
GP+L GV GR AGT FK+ D
Sbjct: 24 GPSLAGVYGRKAGTLAGFKFSD 45
Score = 44 (19.9 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 84 SGFAWTEEDIATYVKDP 100
SG W E + Y+ DP
Sbjct: 50 SGLTWDEPTLTKYLADP 66
Score = 30 (13.6 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 117 MAFKLAKGGEDVAAYLA 133
M F K DVAA +A
Sbjct: 75 MVFAGLKNPADVAAVIA 91
sp|P00038|CYC_APIME CYTOCHROME C pir||CCHB cytochrome c - honeybee
prf||1103243A cytochrome c [Apis mellifera]
Length = 107
Score = 34 (15.4 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 21 AGDAAKGEKEF 31
AGD KG+K F
Sbjct: 4 AGDPEKGKKIF 14
Score = 34 (15.4 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 5/8 (62%), Positives = 6/8 (75%)
Query: 33 KCKTCHSI 40
KC CH+I
Sbjct: 17 KCAQCHTI 24
Score = 78 (35.4 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDS 77
K GPNLYGV GR G P + Y D+
Sbjct: 31 KVGPNLYGVYGRKTGQAPGYSYTDA 55
Score = 40 (18.1 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 85 GFAWTEEDIATYVKDPGAFL 104
G W +E + Y+++P ++
Sbjct: 60 GITWNKETLFEYLENPKKYI 79
sp|P12831|CYC_BOEPE CYTOCHROME C pir||B25506 cytochrome c -
Boettcherisca peregrina prf||1211285B cytochrome c [Boettcherisca
peregrina]
Length = 107
Score = 35 (15.9 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 21 AGDAAKGEKEF 31
AGD KG+K F
Sbjct: 4 AGDVEKGKKIF 14
Score = 31 (14.1 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 4/10 (40%), Positives = 7/10 (70%)
Query: 33 KCKTCHSIIA 42
+C CH++ A
Sbjct: 17 RCAQCHTVEA 26
Score = 75 (34.0 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDSIVALG 82
K GPNL+G+ GR G P F Y D+ A G
Sbjct: 31 KVGPNLHGLFGRKTGQAPGFAYTDANKAKG 60
Score = 45 (20.4 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 83 ASGFAWTEEDIATYVKDPGAFL 104
A G W E+ + Y+++P ++
Sbjct: 58 AKGITWNEDTLFEYLENPKKYI 79
bbs|128019 cytochrome c [Alligator mississippiensis=alligators, liver,
Peptide, 104 aa]
Length = 104
Score = 31 (14.1 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 22 GDAAKGEKEF 31
GD KG+K F
Sbjct: 1 GDVEKGKKIF 10
Score = 33 (15.0 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 4/8 (50%), Positives = 6/8 (75%)
Query: 33 KCKTCHSI 40
KC CH++
Sbjct: 13 KCAQCHTV 20
Score = 78 (35.4 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDS 77
KTGPNL+G++GR G P F Y ++
Sbjct: 27 KTGPNLHGLIGRKTGQAPGFSYTEA 51
Score = 43 (19.5 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 85 GFAWTEEDIATYVKDPGAFL 104
G W EE + Y+++P ++
Sbjct: 56 GITWGEETLMEYLENPKKYI 75
sp|P00012|CYC_MIRLE CYTOCHROME C pir||CCSLE cytochrome c - southern
elephant seal (tentative sequence)
Length = 104
Score = 31 (14.1 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 22 GDAAKGEKEF 31
GD KG+K F
Sbjct: 1 GDVEKGKKIF 10
Score = 33 (15.0 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 4/8 (50%), Positives = 6/8 (75%)
Query: 33 KCKTCHSI 40
KC CH++
Sbjct: 13 KCAQCHTV 20
Score = 78 (35.4 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDS 77
KTGPNL+G+ GR G P F Y D+
Sbjct: 27 KTGPNLHGLFGRKTGQAPGFSYTDA 51
Score = 43 (19.5 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 85 GFAWTEEDIATYVKDPGAFL 104
G W EE + Y+++P ++
Sbjct: 56 GITWGEETLMEYLENPKKYI 75
sp|P00007|CYC_HIPAM CYTOCHROME C pir||CCHP cytochrome c - hippopotamus
Length = 104
Score = 31 (14.1 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 22 GDAAKGEKEF 31
GD KG+K F
Sbjct: 1 GDVEKGKKIF 10
Score = 33 (15.0 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 4/8 (50%), Positives = 6/8 (75%)
Query: 33 KCKTCHSI 40
KC CH++
Sbjct: 13 KCAQCHTV 20
Score = 78 (35.4 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDS 77
KTGPNL+G+ GR G P F Y D+
Sbjct: 27 KTGPNLHGLFGRKTGQSPGFSYTDA 51
Score = 43 (19.5 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 85 GFAWTEEDIATYVKDPGAFL 104
G W EE + Y+++P ++
Sbjct: 56 GITWGEETLMEYLENPKKYI 75
sp|P00011|CYC_CANFA CYTOCHROME C pir||CCDG cytochrome c - dog
Length = 104
Score = 31 (14.1 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 22 GDAAKGEKEF 31
GD KG+K F
Sbjct: 1 GDVEKGKKIF 10
Score = 33 (15.0 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 4/8 (50%), Positives = 6/8 (75%)
Query: 33 KCKTCHSI 40
KC CH++
Sbjct: 13 KCAQCHTV 20
Score = 78 (35.4 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDS 77
KTGPNL+G+ GR G P F Y D+
Sbjct: 27 KTGPNLHGLFGRKTGQAPGFSYTDA 51
Score = 43 (19.5 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 85 GFAWTEEDIATYVKDPGAFL 104
G W EE + Y+++P ++
Sbjct: 56 GITWGEETLMEYLENPKKYI 75
sp|P00006|CYC_BOVIN CYTOCHROME C pir||CCPG cytochrome c - pig pir||CCBO
cytochrome c - bovine pir||CCSH cytochrome c - sheep (tentative
sequence)
Length = 104
Score = 31 (14.1 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 22 GDAAKGEKEF 31
GD KG+K F
Sbjct: 1 GDVEKGKKIF 10
Score = 33 (15.0 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 4/8 (50%), Positives = 6/8 (75%)
Query: 33 KCKTCHSI 40
KC CH++
Sbjct: 13 KCAQCHTV 20
Score = 78 (35.4 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDS 77
KTGPNL+G+ GR G P F Y D+
Sbjct: 27 KTGPNLHGLFGRKTGQAPGFSYTDA 51
Score = 43 (19.5 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 85 GFAWTEEDIATYVKDPGAFL 104
G W EE + Y+++P ++
Sbjct: 56 GITWGEETLMEYLENPKKYI 75
sp|P00004|CYC_HORSE CYTOCHROME C pir||CCHO cytochrome c - horse
pdb|2PCB|B Equus caballus pdb|1FRC| Cytochrome C (Reduced) (Nmr,
Average Structure) pdb|1OCD| Cytochrome C (Oxidized) From Equus
Caballus, Nmr, Minimized Average Structure Electron Transport
Mol_id: 1; Molecule: Cytochrome C; Chain: Null; Other_details:
Oxidized pdb|2FRC| Cytochrome C (Reduced) From Equus Caballus,
Nmr, Minimized Average Structure Electron Transport Mol_id: 1;
Molecule: Cytochrome C; Chain: Null; Other_details: Reduced
pdb|1AKK| Solution Structure Of Oxidized Horse Heart Cytochrome
C, Nmr, Minimized Average Structure Electron Transport, Cytochrome
C Mol_id: 1; Molecule: Cytochrome C; Chain: Null prf||610169A
cytochrome c [Equus caballus]
Length = 104
Score = 31 (14.1 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 22 GDAAKGEKEF 31
GD KG+K F
Sbjct: 1 GDVEKGKKIF 10
Score = 33 (15.0 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 4/8 (50%), Positives = 6/8 (75%)
Query: 33 KCKTCHSI 40
KC CH++
Sbjct: 13 KCAQCHTV 20
Score = 77 (34.9 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDS 77
KTGPNL+G+ GR G P F Y D+
Sbjct: 27 KTGPNLHGLFGRKTGQAPGFTYTDA 51
Score = 44 (19.9 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 85 GFAWTEEDIATYVKDPGAFL 104
G W EE + Y+++P ++
Sbjct: 56 GITWKEETLMEYLENPKKYI 75
pdb|1HRC| Cytochrome C pdb|1CRC|A Equus caballus pdb|1CRC|B Equus
caballus
Length = 105
Score = 31 (14.1 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 22 GDAAKGEKEF 31
GD KG+K F
Sbjct: 2 GDVEKGKKIF 11
Score = 33 (15.0 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 4/8 (50%), Positives = 6/8 (75%)
Query: 33 KCKTCHSI 40
KC CH++
Sbjct: 14 KCAQCHTV 21
Score = 77 (34.9 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDS 77
KTGPNL+G+ GR G P F Y D+
Sbjct: 28 KTGPNLHGLFGRKTGQAPGFTYTDA 52
Score = 44 (19.9 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 85 GFAWTEEDIATYVKDPGAFL 104
G W EE + Y+++P ++
Sbjct: 57 GITWKEETLMEYLENPKKYI 76
sp|P00039|CYC_MANSE CYTOCHROME C
Length = 108
Score = 35 (15.9 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 21 AGDAAKGEKEF 31
AGD KG+K F
Sbjct: 5 AGDVEKGKKLF 15
Score = 31 (14.1 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 4/10 (40%), Positives = 7/10 (70%)
Query: 33 KCKTCHSIIA 42
+C CH++ A
Sbjct: 18 RCAQCHTVEA 27
Score = 74 (33.6 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDSIVALG 82
K GPNL+G GR G P F Y D+ A G
Sbjct: 32 KIGPNLHGFFGRKTGQAPGFSYSDANKAKG 61
Score = 45 (20.4 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 83 ASGFAWTEEDIATYVKDPGAFL 104
A G W E+ + Y+++P ++
Sbjct: 59 AKGITWNEDTLFEYLENPKKYI 80
prf||711086A cytochrome c [Equus burchelli]
Length = 104
Score = 31 (14.1 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 22 GDAAKGEKEF 31
GD KG+K F
Sbjct: 1 GDVEKGKKIF 10
Score = 33 (15.0 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 4/8 (50%), Positives = 6/8 (75%)
Query: 33 KCKTCHSI 40
KC CH++
Sbjct: 13 KCAQCHTV 20
Score = 76 (34.5 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDS 77
KTGPNL+G+ GR G P F Y ++
Sbjct: 27 KTGPNLHGLFGRKTGQAPGFSYTBA 51
Score = 44 (19.9 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 85 GFAWTEEDIATYVKDPGAFL 104
G W EE + Y+++P ++
Sbjct: 56 GITWKEETLMEYLENPKKYI 75
sp|P00028|CYC_ENTTR CYTOCHROME C pir||CCLM cytochrome c - Pacific lamprey
Length = 104
Score = 32 (14.5 bits), Expect = 2.7e-06, Sum P(4) = 2.7e-06
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 22 GDAAKGEKEF 31
GD KG+K F
Sbjct: 1 GDVEKGKKVF 10
Score = 34 (15.4 bits), Expect = 2.7e-06, Sum P(4) = 2.7e-06
Identities = 4/8 (50%), Positives = 6/8 (75%)
Query: 33 KCKTCHSI 40
KC CH++
Sbjct: 13 KCSQCHTV 20
Score = 74 (33.6 bits), Expect = 2.7e-06, Sum P(4) = 2.7e-06
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDS 77
KTGPNL G+ GR G P F Y D+
Sbjct: 27 KTGPNLSGLFGRKTGQAPGFSYTDA 51
Score = 43 (19.5 bits), Expect = 2.7e-06, Sum P(4) = 2.7e-06
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 83 ASGFAWTEEDIATYVKDPGAFL 104
+ G W +E + Y+++P ++
Sbjct: 54 SKGIVWNQETLFVYLENPKKYI 75
bbs|170137 cytochrome c-550 [Magnetospirillum magnetotacticum, ATCC
31632, Peptide, 97 aa]
Length = 97
Score = 48 (21.8 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 31 FNKCKTCHSIIA 42
FN+CK CH + A
Sbjct: 7 FNQCKACHKVEA 18
Score = 63 (28.6 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 55 GPNLYGVVGRTAGTYPEFKYKDSIVALG 82
GP+L+GV G AG +KY D+ V G
Sbjct: 24 GPSLFGVFGAKAGHAEGYKYSDNHVKSG 51
Score = 49 (22.2 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 84 SGFAWTEEDIATYVKDPGA 102
SG W E +++ Y+ DP A
Sbjct: 50 SGLVWDEANLSKYLADPKA 68
sp|P00026|CYC_CYPCA CYTOCHROME C, ISO-1 AND ISO-2 pir||CCCA cytochrome
c - common carp
Length = 103
Score = 32 (14.5 bits), Expect = 3.4e-06, Sum P(4) = 3.4e-06
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 22 GDAAKGEKEF 31
GD KG+K F
Sbjct: 1 GDVEKGKKVF 10
Score = 33 (15.0 bits), Expect = 3.4e-06, Sum P(4) = 3.4e-06
Identities = 4/8 (50%), Positives = 6/8 (75%)
Query: 33 KCKTCHSI 40
KC CH++
Sbjct: 13 KCAQCHTV 20
Score = 71 (32.2 bits), Expect = 3.4e-06, Sum P(4) = 3.4e-06
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDS 77
K GPNL+G+ GR G P F Y ++
Sbjct: 27 KVGPNLWGLFGRKTGQAPGFSYTBA 51
Score = 46 (20.9 bits), Expect = 3.4e-06, Sum P(4) = 3.4e-06
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 83 ASGFAWTEEDIATYVKDPGAFL 104
+ G W ++ + Y+++P ++
Sbjct: 54 SKGIVWBZZTLMEYLZBPKKYI 75
pir||CCFFCM cytochrome c - Mediterranean fruit fly prf||1211285A
cytochrome c [Drosophila melanogaster]
Length = 107
Score = 35 (15.9 bits), Expect = 4.1e-06, Sum P(4) = 4.1e-06
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 21 AGDAAKGEKEF 31
AGD KG+K F
Sbjct: 4 AGDVEKGKKLF 14
Score = 31 (14.1 bits), Expect = 4.1e-06, Sum P(4) = 4.1e-06
Identities = 4/10 (40%), Positives = 7/10 (70%)
Query: 33 KCKTCHSIIA 42
+C CH++ A
Sbjct: 17 RCAQCHTVEA 26
Score = 71 (32.2 bits), Expect = 4.1e-06, Sum P(4) = 4.1e-06
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDSIVALG 82
K GPNL+G++GR G F Y D+ A G
Sbjct: 31 KVGPNLHGLIGRKTGQAAGFAYTDANKAKG 60
Score = 45 (20.4 bits), Expect = 4.1e-06, Sum P(4) = 4.1e-06
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 83 ASGFAWTEEDIATYVKDPGAFL 104
A G W E+ + Y+++P ++
Sbjct: 58 AKGITWNEDTLFEYLENPKKYI 79
sp|P00034|CYC2_DROME CYTOCHROME C-2 pir||CCFFDM cytochrome c DC4 -
fruit fly (Drosophila melanogaster) gi|7783 (X01760) cytochrome c
(DC4) (aa 1-107) [Drosophila melanogaster] gi|157161 (M11381)
cytochrome C [Drosophila melanogaster]
Length = 108
Score = 35 (15.9 bits), Expect = 4.4e-06, Sum P(4) = 4.4e-06
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 21 AGDAAKGEKEF 31
AGD KG+K F
Sbjct: 5 AGDVEKGKKLF 15
Score = 31 (14.1 bits), Expect = 4.4e-06, Sum P(4) = 4.4e-06
Identities = 4/10 (40%), Positives = 7/10 (70%)
Query: 33 KCKTCHSIIA 42
+C CH++ A
Sbjct: 18 RCAQCHTVEA 27
Score = 71 (32.2 bits), Expect = 4.4e-06, Sum P(4) = 4.4e-06
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDSIVALG 82
K GPNL+G++GR G F Y D+ A G
Sbjct: 32 KVGPNLHGLIGRKTGQAAGFAYTDANKAKG 61
Score = 45 (20.4 bits), Expect = 4.4e-06, Sum P(4) = 4.4e-06
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 83 ASGFAWTEEDIATYVKDPGAFL 104
A G W E+ + Y+++P ++
Sbjct: 59 AKGITWNEDTLFEYLENPKKYI 80
sp|P10715|CYC2_RAT CYTOCHROME C, TESTIS-SPECIFIC pir||CCRTT cytochrome
c, testis-specific - rat gi|203729 (M20628) testis-specific
cytochrome c [Rattus norvegicus] gi|203731 (M20623) testis-specific
cytochrome c [Rattus norvegicus]
Length = 105
Score = 33 (15.0 bits), Expect = 5.5e-06, Sum P(3) = 5.5e-06
Identities = 4/8 (50%), Positives = 6/8 (75%)
Query: 33 KCKTCHSI 40
KC CH++
Sbjct: 14 KCAQCHTV 21
Score = 78 (35.4 bits), Expect = 5.5e-06, Sum P(3) = 5.5e-06
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDS 77
KTGPNL+G+ GR G P F Y D+
Sbjct: 28 KTGPNLWGLFGRKTGQAPGFSYTDA 52
Score = 48 (21.8 bits), Expect = 5.5e-06, Sum P(3) = 5.5e-06
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 85 GFAWTEEDIATYVKDPGAFL 104
G WTEE + Y+++P ++
Sbjct: 57 GVIWTEETLMEYLENPKKYI 76
bbs|163158 apocytochrome c [horses, heart, Peptide, 104 aa]
Length = 104
Score = 31 (14.1 bits), Expect = 6.3e-06, Sum P(4) = 6.3e-06
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 22 GDAAKGEKEF 31
GD KG+K F
Sbjct: 1 GDVEKGKKIF 10
Score = 30 (13.6 bits), Expect = 6.3e-06, Sum P(4) = 6.3e-06
Identities = 4/8 (50%), Positives = 5/8 (62%)
Query: 33 KCKTCHSI 40
KC CH +
Sbjct: 13 KCAQCHYV 20
Score = 75 (34.0 bits), Expect = 6.3e-06, Sum P(4) = 6.3e-06
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 53 KTGPNLYGVVGRTAGTYPEFKYKDS 77
KTGPNL+G+ GR G P F Y D+
Sbjct: 27 KTGPNLHGLFGRKYGQAPGFTYTDA 51
Score = 44 (19.9 bits), Expect = 6.3e-06, Sum P(4) = 6.3e-06
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 85 GFAWTEEDIATYVKDPGAFL 104
G W EE + Y+++P ++
Sbjct: 56 GITWKEETLMEYLENPKKYI 75
Parameters:
V=100
B=50
H=0
Lambda K H
0.314 0.132 0.376
Cutoff to enter 2nd pass: >= 41 ( 0.0 bits)
E S T1 T2 X1 X2 W Gap
10.0 62 11 11 -16 -23 40 50
Database: Non-redundant GenBank CDS translations+PDB+SwissProt+SPupdate+PIR
Posted date: Dec 5, 1997 6:31 AM
# of letters in database: 82,859,678
# of sequences in database: 277,055
Number of Hits to DB: 1st pass: 22435341, 2nd pass: 464225
Number of Sequences: 1st pass: 277055, 2nd pass: 2361
Number of extensions: 1st pass: 949921, 2nd pass: 356009
Number of successful extensions: 1st pass: 2361, 2nd pass: 4470
Number of sequences better than 10: 202