NPS@ is the IBCP contribution to PBIL in Lyon, France
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Monday, February 17th 2003 : NPS@ release 3.0 is now running on a Linux cluster
HMMER (hmmbuild and hmmsearch) is now available (see news)
Job CLUSTALW (ID: 628) is running on NPS@ server (started on Mon Aug 4 01:48:33 CEST 2003).
Results will be shown below. Please wait and don't go back.
In your publication cite :
NPS@: Network Protein Sequence Analysis
TIBS 2000 March Vol. 25, No 3 [291]:147-150
Combet C., Blanchet C., Geourjon C. and Deléage G.

CLUSTALW multiple alignment

Abstract Thompson, J.D., Higgins, D.G. and Gibson, T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. (1994) Nucleic Acids Research, 22, 4673-4680 [HELP]
alignment with width :
residues.
Conservation level of % (works with "using conservation level of" option in list above).

View CLUSTALW in: [MPSA (Mac, UNIX) , About...] [AnTheProt (PC) , Download...] [HELP] 


                     10        20        30        40        50        60
                      |         |         |         |         |         |
13385167     ----------------GCTCTCTTCGGGCCGTCGTT-CGAACGAAAGGTCGTCCC-TGTG
12852344     ----------------GCTCTCTTCGGGCCGTCGTT-CGAACGAAAGGTCGTCCC-TGTG
12834944     ----------------------------------------------------------GG
12848765     ------------------------------------------------------------
18044190     ------------CCCGCTCCTCTTCGGGCCGTCGTT-CGAACGAAAGGTCGTCCC-TGTG
28422109     ------------CCCGCTCCTCTTCGGGCCGTCGTT-CGAACGAAAGGTCGTCCC-TGTG
163043       ------------------------------------------------------------
5174742      GTCGTCACGCGTCCCGCGCCTCCTCGCGCCTGCACCGTGGTTGGAAGGTCGTCCCCTGTG
                                                                         
Prim.cons.   GTCGTCACGCGTCCCGC2CCTCTTCGGGCCGTCGTTGCGAACGAAAGGTCGTCCCCTGTG

                     70        80        90       100       110       120
                      |         |         |         |         |         |
13385167     ACCGACGAGGTGGTTTGAGCAGCTGTCGCCATGTTGTCGGTCGCCGCCCGCTCGGGCCCG
12852344     ACCGACGAGGTGGTTTGAGCAGCTGTCGCCATGTTGTCGGTCGCCGCCCGCTCGGGCCCG
12834944     ACCGACGAGGTGGTTTGAGCAGCTGTCGCCATGTTGTCGGTCGCCGCCCGCTCGGGCCCG
12848765     ----------GGGTTTGAGCAGCTGTCGCCATGTTGTCGGTCGCCGCCCGCTCGGGCCCG
18044190     ACCGACGAGGTGGTTTGAGCAGCTGTCGCCATGTTGTCGGTCGCCGCCCGCTCGGGCCCG
28422109     ACCGACGAGGTGGTTTGAGCAGCTGTCGCCATGTTGTCGGTCGCCGCCCGCTCGGGCCCG
163043       ---------------GGAGCTGCTGTCGCCATGTTGTCGGTTGCCGCCCGCTCGCGCC-A
5174742      ACCGGTTGGGCGGTTGGAGCGGCTGTCGCCATGTTGTCGGTAGCAGCCCGCTCGGGCCCG
                             **** ******************** ** ********* ***  
Prim.cons.   ACCGACGAGGTGGTTTGAGCAGCTGTCGCCATGTTGTCGGTCGCCGCCCGCTCGGGCCCG

                    130       140       150       160       170       180
                      |         |         |         |         |         |
13385167     TTCGCGCCCGTCCTATCGGCCACTTCCCGCGGGGTGGCGGGCGCGCTGCGTCCTCTGCTG
12852344     TTCGCGCCCGTCCTATCGGCCACTTCCCGCGGGGTGGCGGGCGCGCTGCGTCCTCTGCTG
12834944     TTCGCGCCCGTCCTATCGGCCACTTCCCGCGGGGTGGCGGGCGCGCTGCGTCCTCTGCTG
12848765     TTCGCGCCCGTCCTATCGGCCACTTCCCGCGGGGTGGCGGGCGCGCTGCGTCCTCTGCTG
18044190     TTCGCGCCCGTCCTATCGGCCACTTCCCGCGGGGTGGCGGGCGCGCTGCGTCCTCTGCTG
28422109     TTCGCGCCCGTCCTATCGGCCACTTCCCGCGGGGTGGCGGGCGCGCTGCGTCCTCTGCTG
163043       TTCGCGCCCGTCCTATCGGCCACGTCCCGCGGGGTGGCG--CGCGCTGCGGCCCT-GGTA
5174742      TTCGCGCCCGTCCTGTCGGCCACGTCCCGCGGGGTGGCGGGCGCGCTGCGGCCCTTGGTG
             ************** ******** ***************  ********* **   * * 
Prim.cons.   TTCGCGCCCGTCCTATCGGCCACTTCCCGCGGGGTGGCGGGCGCGCTGCGTCCTCTGCTG

                    190       200       210       220       230       240
                      |         |         |         |         |         |
13385167     CAAGGCGCGGTGCCCGCCGCCTC-GGAGCCACCTGTTCTGGATGTGAAGCGACCCTTCCT
12852344     CAAGGCGCGGTGCCCGCCGCCTC-GGAGCCACCTGTTCTGGATGTGAAGCGACCCTTCCT
12834944     CAAGGCGCGGTGCCCGCCGCCTC-GGAGCCACCTGTTCTGGATGTGAAGCGACCCTTCCT
12848765     CAAGGCGCGGTGCCCGCCGCCTC-GGAGCCACCTGTTCTGGATGTGAAGCGACCCTTCCT
18044190     CAAGGCGCGGTGCCCGCCGCCTC-GGAGCCACCTGTTCTGGATGTGAAGCGACCCTTCCT
28422109     CAAGGCGCGGTGCCCGCCGCCTC-GGAGCCACCTGTTCTGGATGTGAAGCGACCCTTCCT
163043       CAG---------CCGGTCGTCCAAGGAGTCGCCTGTGCTGGACTTGAAGCGCTCCGTCCT
5174742      CAGGCCACGGTGCCCGCCACCCC-GGAGCAGCCTGTGTTGGACCTGAAGCGGCCCTTCCT
             **          ** * *  *   ****   *****  ****  *******  ** ****
Prim.cons.   CAAGGCGCGGTGCCCGCCGCCTCAGGAGCCACCTGTTCTGGATGTGAAGCGACCCTTCCT

                    250       260       270       280       290       300
                      |         |         |         |         |         |
13385167     GTGCCGCGAGTCCCTGAGTGGCCAGGCCGCAGCCCGGCCTTTGGTGGCCACGGTGGGCCT
12852344     GTGCCGCGAGTCCCTGAGTGGCCAGGCCGCAGCCCGGCCTTTGGTGGCCACGGTGGGCCT
12834944     GTGCCGCGAGTCCCTGAGTGGCCAGGCCGCAGCCCGGCCTTTGGTGGCCACGGTGGGCCT
12848765     GTGCCGCGAGTCCCTGAGTGGCCAGGCCGCAGCCCGGCCTTTGGTGGCCACGGTGGGCCT
18044190     GTGCCGCGAGTCCCTGAGTGGCCAGGCCGCAGCCCGGCCTTTGGTGGCCACGGTGGGCCT
28422109     GTGCCGCGAGTCCCTGAGTGGCCAGGCCGCAGCCCGGCCTTTGGTGGCCACGGTGGGCCT
163043       GTGCCGGGAGTCGCTCAGAGGCCAGGCCG--CGGCGGC-TTTGGTCGCTTCCGTGAGCCT
5174742      CAGCCGGGAGTCGCTGAGCGGCCAGGCCGTGCGCCGGCCTTTGGTCGCCTCCGTGGGCCT
               **** ***** ** ** **********     **** ****** **  * *** ****
Prim.cons.   GTGCCGCGAGTCCCTGAGTGGCCAGGCCGCAGCCCGGCCTTTGGTGGCCACGGTGGGCCT

                    310       320       330       340       350       360
                      |         |         |         |         |         |
13385167     GAACGTTCCTGCTTCTGTCCGTTTTTCCCATACAGATGTCAAGGTGCCCGACTTCTCTGA
12852344     GAACGTTCCTGCTTCTGTCCGTTTTTCCCATACAGATGTCAAGGTGCCCGACTTCTCTGA
12834944     GAACGTTCCTGCTTCTGTCCGTTTTTCCCATACAGATGTCAAGGTGCCCGACTTCTCTGA
12848765     GAACGTTCCTGCTTCTGTCCGTTTTTCCCATACAGATGTCAAGGTGCCCGACTTCTCTGA
18044190     GAACGTTCCTGCTTCTGTCCGTTTTTCCCATACAGATGTCAAGGTGCCCGACTTCTCTGA
28422109     GAACGTTCCTGCTTCTGTCCGTTTTTCCCATACAGATGTCAAGGTGCCCGACTTCTCTGA
163043       CAATGTCCCTGCTTCTGTCCGTTATTCCCATACAGACATCAAAGTGCCTGACTTCTCTGA
5174742      CAATGTCCCTGCTTCTGTTTGTTATTCCCACACAGACATCAAGGTGCCTGACTTCTCTGA
              ** ** ***********  *** ****** *****  **** ***** ***********
Prim.cons.   GAACGTTCCTGCTTCTGTCCGTTTTTCCCATACAGATGTCAAGGTGCCCGACTTCTCTGA

                    370       380       390       400       410       420
                      |         |         |         |         |         |
13385167     CTATCGTCGTGCTGAAGTTCTTGATAGCACAAAATCTTCTAAAGAAAGCAGTGAGGCTAG
12852344     CTATCGTCGTGCTGAAGTTCTTGATAGCACAAAATCTTCTAAAGAAAGCAGTGAGGCTAG
12834944     CTATCGTCGTGCTGAAGTTCTTGATAGCACAAAATCTTCTAAAGAAAGCAGTGAGGCTAG
12848765     CTATCGTCGTGCTGAAGTTCTTGATAGCACAAAATCTTCTAAAGAAAGCAGTGAGGCTAG
18044190     CTATCGTCGTGCTGAAGTTCTTGATAGCACAAAATCTTCTAAAGAAAGCAGTGAGGCTAG
28422109     CTATCGTCGTGCTGAAGTTCTTGATAGCACAAAATCTTCTAAAGAAAGCAGTGAGGCTAG
163043       CTATCGTCGCCCTGAAGTGTTAGATAGTACAAAGTCTTCAAAAGAGAGCAGTGAGGCTCG
5174742      ATACCGCCGCCTTGAAGTTTTAGATAGTACGAAGTCTTCAAGAGAAAGCAGCGAGGCTAG
              ** ** **   ******  * ***** ** ** ***** * *** ***** ****** *
Prim.cons.   CTATCGTCGTGCTGAAGTTCTTGATAGCACAAAATCTTCTAAAGAAAGCAGTGAGGCTAG

                    430       440       450       460       470       480
                      |         |         |         |         |         |
13385167     AAAAGGCTTCTCTTACCTGGTAACTGCAACTACTACTGTGGGTGTTGCTTATGCGGCCAA
12852344     AAAAGGCTTCTCTTACCTGGTAACTGCAACTACTACTGTGGGTGTTGCTTATGCGGCCAA
12834944     AAAAGGCTTCTCTTACCTGGTAACTGCAACTACTACTGTGGGTGTTGCTTATGCGGCCAA
12848765     AAAAGGCTTCTCTTACCTGGTAACTGCAACTACTACTGTGGGTGTTGCTTATGCGGCCAA
18044190     AAAAGGCTTCTCTTACCTGGTAACTGCAACTACTACTGTGGGTGTTGCTTATGCGGCCAA
28422109     AAAAGGCTTCTCTTACCTGGTAACTGCAACTACTACTGTGGGTGTTGCTTATGCGGCCAA
163043       GAAAGGTTTCTCCTATTTGGTGACTGCAACAACTACTGTGGGTGTTGCATATGCTGCCAA
5174742      GAAAGGTTTCTCCTATTTGGTAACTGGAGTAACTACTGTGGGTGTCGCATATGCTGCCAA
              ***** ***** **  **** **** *   ************** ** ***** *****
Prim.cons.   AAAAGGCTTCTCTTACCTGGTAACTGCAACTACTACTGTGGGTGTTGCTTATGCGGCCAA

                    490       500       510       520       530       540
                      |         |         |         |         |         |
13385167     AAATGTGGTCTCCCAGTTTGTTTCCAGCATGAGTGCTTCTGCTGACGTACTGGCCATGTC
12852344     AAATGTGGTCTCCCAGTTTGTTTCCAGCATGAGTGCTTCTGCTGACGTACTGGCCATGTC
12834944     AAATGTGGTCTCCCAGTTTGTTTCCAGCATGAGTGCTTCTGCTGACGTACTGGCCATGTC
12848765     AAATGTGGTCTCCCAGTTTGTTTCCAGCATGAGTGCTTCTGCTGACGTACTGGCCATGTC
18044190     AAATGTGGTCTCCCAGTTTGTTTCCAGCATGAGTGCTTCTGCTGACGTACTGGCCATGTC
28422109     AAATGTGGTCTCCCAGTTTGTTTCCAGCATGAGTGCTTCTGCTGACGTACTGGCCATGTC
163043       GAATGTCGTCTCTCAGTTTGTTTCCAGCATGAGTGCTTCTGCCGATGTGTTGGCCATGTC
5174742      GAATGCCGTCACCCAGTTCGTTTCCAGCATGAGTGCTTCTGCTGATGTGTTGGCCCTGGC
              ****  *** * ***** *********************** ** **  ***** ** *
Prim.cons.   AAATGTGGTCTCCCAGTTTGTTTCCAGCATGAGTGCTTCTGCTGACGTACTGGCCATGTC

                    550       560       570       580       590       600
                      |         |         |         |         |         |
13385167     GAAGATCGAGATCAAGTTGTCTGATATCCCTGAAGGGAAGAACATGGCTTTTAAATGGAG
12852344     GAAGATCGAGATCAAGTTGTCTGATATCCCTGAAGGGAAGAACATGGCTTTTAAATGGAG
12834944     GAAGATCGAGATCAAGTTGTCTGATATCCCTGAAGGGAAGAACATGGCTTTTAAATGGAG
12848765     GAAGATCGAGATCAAGTTGTCTGATATCCCTGAAGGGAAGAACATGGCTTTTAAATGGAG
18044190     GAAGATCGAGATCAAGTTGTCTGATATCCCTGAAGGGAAGAACATGGCTTTTAAATGGAG
28422109     GAAGATCGAGATCAAGTTGTCTGATATCCCTGAAGGGAAGAACATGGCTTTTAAATGGAG
163043       GAAAATTGAAATCAAGTTATCCGATATTCCAGAGGGGAAGAACATGGCTTTCAAATGGAG
5174742      GAAAATCGAAATCAAGTTATCCGATATTCCAGAAGGCAAGAACATGGCTTTCAAATGGAG
             *** ** ** ******** ** ***** ** ** ** ************** ********
Prim.cons.   GAAGATCGAGATCAAGTTGTCTGATATCCCTGAAGGGAAGAACATGGCTTTTAAATGGAG

                    610       620       630       640       650       660
                      |         |         |         |         |         |
13385167     AGGCAAACCTCTGTTTGTGCGCCATAGAACCAAGAAGGAGATTGACCAGGAAGCTGCAGT
12852344     AGGCAAACCTCTGTTTGTGCGCCATAGAACCAAGAAGGAGATTGACCAGGAAGCTGCAGT
12834944     AGGCAAACCTCTGTTTGTGCGCCATAGAACCAAGAAGGAGATTGACCAGGAAGCTGCAGT
12848765     AGGCAAACCTCTGTTTGTGCGCCATAGAACCAAGAAGGAGATTGACCAGGAAGCTGCAGT
18044190     AGGCAAACCTCTGTTTGTGCGCCATAGAACCAAGAAGGAGATTGACCAGGAAGCTGCAGT
28422109     AGGCAAACCTCTGTTTGTGCGCCATAGAACCAAGAAGGAGATTGACCAGGAAGCTGCAGT
163043       AGGCAAACCCCTGTTCGTGCGCCATCGAACCAAGAAGGAAATTGACCAGGAAGCTGCAGT
5174742      AGGCAAACCCCTGTTTGTGCGTCATAGAACCCAGAAGGAAATTGAGCAGGAAGCTGCAGT
             ********* ***** ***** *** ***** ******* ***** **************
Prim.cons.   AGGCAAACCTCTGTTTGTGCGCCATAGAACCAAGAAGGAGATTGACCAGGAAGCTGCAGT

                    670       680       690       700       710       720
                      |         |         |         |         |         |
13385167     CGAAGTGTCCCAGTTAAGGGACCCACAGCATGATTTAGATCGAGTAAAGAAACCTGAATG
12852344     CGAAGTGTCCCAGTTAAGGGACCCACAGCATGATTTAGATCGAGTAAAGAAACCTGAATG
12834944     CGAAGTGTCCCAGTTAAGGGACCCACAGCATGATTTAGATCGAGTAAAGAAACCTGAATG
12848765     CGAAGTGTCCCAGTTAAGGGACCCACAGCATGATTTAGATCGAGTAAAGAAACCTGAATG
18044190     CGAAGTGTCCCAGTTAAGGGACCCACAGCATGATTTAGATCGAGTAAAGAAACCTGAATG
28422109     CGAAGTGTCCCAGTTAAGGGACCCACAGCATGATTTAGATCGAGTAAAGAAACCTGAATG
163043       TGAAGTGTCCCAGTTGAGGGACCCACAGCATGACTTAGAACGAGTAAAGAAACCTGAGTG
5174742      TGAATTATCACAGTTGAGGGACCCACAGCATGATCTAGATCGAGTAAAGAAACCTGAATG
              *** * ** ***** *****************  **** ***************** **
Prim.cons.   CGAAGTGTCCCAGTTAAGGGACCCACAGCATGATTTAGATCGAGTAAAGAAACCTGAATG

                    730       740       750       760       770       780
                      |         |         |         |         |         |
13385167     GGTTATTCTGATAGGTGTCTGTACTCATCTTGGTTGTGTACCCATTGCAAACGCAGGAGA
12852344     GGTTATTCTGATAGGTGTCTGTACTCATCTTGGTTGTGTACCCATTGCAAACGCAGGAGA
12834944     GGTTATTCTGATAGGTGTCTGTACTCATCTTGGTTGTGTACCCATTGCAAACGCAGGAGA
12848765     GGTTATTCTGATAGGTGTCTGTACTCATCTTGGTTGTGTACCCATTGCAAACGCAGGAGA
18044190     GGTTATTCTGATAGGTGTCTGTACTCATCTTGGTTGTGTACCCATTGCAAACGCAGGAGA
28422109     GGTTATTCTGATAGGTGTCTGTACTCATCTTGGTTGTGTACCCATTGCAAACGCAGGAGA
163043       GGTTATCTTGATAGGTGTTTGCACTCATCTTGGTTGTGTACCCATTGCAAATGCAGGAGA
5174742      GGTTATCCTGATAGGTGTTTGCACTCATCTTGGCTGTGTACCCATTGCAAATGCAGGAGA
             ******  ********** ** *********** ***************** ********
Prim.cons.   GGTTATTCTGATAGGTGTCTGTACTCATCTTGGTTGTGTACCCATTGCAAACGCAGGAGA

                    790       800       810       820       830       840
                      |         |         |         |         |         |
13385167     TTTTGGTGGCTATTATTGCCCCTGCCATGGGTCACACTATGACGCCTCTGGCAGGATCAG
12852344     TTTTGGTGGCTATTATTGCCCCTGCCATGGGTCACACTATGACGCCTCTGGCAGGATCAG
12834944     TTTTGGTGGCTATTATTGCCCCTGCCATGGGTCACACTATGACGCCTCTGGCAGGATCAG
12848765     TTTTGGTGGCTATTATTGCCCCTGCCATGGGTCACACTATGACGCCTCTGGCAGGATCAG
18044190     TTTTGGTGGCTATTATTGCCCCTGCCATGGGTCACACTATGACGCCTCTGGCAGGATCAG
28422109     TTTTGGTGGCTATTATTGCCCCTGCCATGGGTCACACTATGACGCCTCTGGCAGGATCAG
163043       TTTTGGTGGTTATTACTGCCCTTGCCATGGGTCACACTATGATGCGTCTGGCAGAATCAG
5174742      TTTTGGTGGTTATTACTGCCCTTGCCATGGGTCACACTATGATGCATCTGGCAGGATCAG
             ********* ***** ***** ******************** ** ******** *****
Prim.cons.   TTTTGGTGGCTATTATTGCCCCTGCCATGGGTCACACTATGACGCCTCTGGCAGGATCAG

                    850       860       870       880       890       900
                      |         |         |         |         |         |
13385167     GAAGGGCCCTGCACCTCTCAACCTGGAAGTGCCTGCCTACGAGTTCACCAGTGATGATGT
12852344     GAAGGGCCCTGCACCTCTCAACCTGGAAGTGCCTGCCTACGAGTTCACCAGTGATGATGT
12834944     GAAGGGCCCTGCACCTCTCAACCTGGAAGTGCCTGCCTACGAGTTCACCAGTGATGATGT
12848765     GAAGGGCCCTGCACCTCTCAACCTGGAAGTGCCTGCCTACGAGTTCACCAGTGATGATGT
18044190     GAAGGGCCCTGCACCTCTCAACCTGGAAGTGCCTGCCTACGAGTTCACCAGTGATGATGT
28422109     GAAGGGCCCTGCACCTCTCAACCTGGAAGTGCCTGCCTACGAGTTCACCAGTGATGATGT
163043       AAAGGGGCCTGCACCTCTCAACCTTGAAGTTCCCTCATATGAGTTCACCAGCGATGATAT
5174742      ATTGGGTCCTGCTCCTCTCAACCTTGAAGTCCCCACGTATGAGTTCACCAGTGACGATAT
                *** ***** *********** ***** **  * ** *********** ** *** *
Prim.cons.   GAAGGGCCCTGCACCTCTCAACCTGGAAGTGCCTGCCTACGAGTTCACCAGTGATGATGT

                    910       920       930       940       950       960
                      |         |         |         |         |         |
13385167     AGTTGTTGTGGGTTA--GACACGTGGACTCAGGGCCTAGGTTTCTGTCGGTCTTCAGGTC
12852344     AGTTGTTGTGGGTTA--GACACGTGGACTCAGGGCCTAGGTTTCTGTCGGTCTTCAGGTC
12834944     AGTTGTTGTGGGTTA--GACACGTGGACTCAGGGCCTAGGTTTCTGTCGGTCTTCAGGTC
12848765     AGTTGTTGTGGGTTA--GACACGTGGACTCAGGGCCTAGGTTTCTGTCGGTCTTCAGGTC
18044190     AGTTGTTGTGGGTTA--GACACGTGGACTCAGGGCCTAGGTTTCTGTCGGTCTTCAGGTC
28422109     AGTTGTTGTGGGTTA--GACACGTGGACTCAGGGCCTAGGTTTCTGTCGGTCTTCAGGTC
163043       GGTGATTGTTGGTTAGAGAGACCTGGACTCGAGTTACAGGCTTCTTTC-GTCTTCATGTC
5174742      GGTGATTGTTGGTTA-AGAGACTTGGACTCAAGTCATAGGCTTCTTTCAGTCTTTATGTC
              **  **** *****  ** ** *******  *    *** **** ** ***** * ***
Prim.cons.   AGTTGTTGTGGGTTAGAGACACGTGGACTCAGGGCCTAGGTTTCTGTCGGTCTTCAGGTC

                    970       980       990      1000      1010      1020
                      |         |         |         |         |         |
13385167     CCCTCAGAAGAGT-----GGAGAGTAAGCCTTGTGTACGTCTAGGTTGGTTGATTTAAAA
12852344     CCCTCAGAAGAGT-----GGAGAGTAAGCCTTGTGTACGTCTAGGTTGGTTGATTTAAAA
12834944     CCCTCAGAAGAGT-----GGAGAGTAAGCCTTGTGTACGTCTAGGTTGGTTGATTTAAAA
12848765     CCCTCAGAAGAGT-----GGAGAGTAAGCCTTGTGTACGTCTAGGTTGGTTGATTTAAAA
18044190     CCCTCAGAAGAGT-----GGAGAGTAAGCCTTGTGTACGTCTAGGTTGGTTGATTTAAAA
28422109     CCCTCAGAAGAGT-----GGAGAGTAAGCCTTGTGTACGTCTAGGTTGGTTGATTTAAAA
163043       ACCTCAGAAGAGTTACTTGAAGAACAAGCCTTCTGTGC-TTTGAATTAGTTGATTTGAAA
5174742      ACCTCAGGAGACTTATTTGA-GAGGAAGCCTTCTGTAC-TT-GAA---GTTGATTTGAAA
              ****** *** *     *  **  ******* *** * *        ******** ***
Prim.cons.   CCCTCAGAAGAGTTA2TTGGAGAGTAAGCCTTGTGTACGTCTAGGTTGGTTGATTTAAAA

                   1030      1040      1050      1060      1070      1080
                      |         |         |         |         |         |
13385167     TATTTAAGAATTGTTAATAATGTATTGGCAAACATTAATGTGAAGTAA-TTGAATTCACT
12852344     TATTTAAGAATTGTTAATAATGTATTGGCAAACATTAATGTGAAGTAA-TTGAATTCACT
12834944     TATTTAAGAATTGTTAATAATGTATTGGCAAACATTAATGTGAAGTAA-TTGAATTCACT
12848765     TATTTAAGAATTGTTAATAATGTATTGGCAAACATTAATGTGAAGTAA-TTGAATTCACT
18044190     TATTTAAGAATTGTTAATAATGTATTGGCAAACATTAATGTGAAGTAA-TTGAATTCACT
28422109     TATTTAAGAATTGTTAATAATGTATTGGCAAACATTAATGTGAAGTAA-TTGAATTCACT
163043       TATTTAAGAATTGCTAATAATGTGTTTGCAAACAT---------GTAAATTGAATTTAAT
5174742      TATGTAAGAATTG---ATGATGTATTTGCAAACATTAATGTGAAATAAATTGAATTTAAT
             *** *********   ** **** ** ********          *** ******* * *
Prim.cons.   TATTTAAGAATTGTTAATAATGTATTGGCAAACATTAATGTGAAGTAAATTGAATTCACT

                   1090      1100      1110      1120      1130      1140
                      |         |         |         |         |         |
13385167     GTTAAATATTATCAAGCATTAGCATAATAAAACCACT-GTTGAACATCATTAGATTCAGT
12852344     GTTAAATATTATCAAGCATTAGCATAATAAAACCACT-GTTGAACATCATTAGATTCAGT
12834944     GTTAAATATTATCAAGCATTAGCATAATAAAACCACT-GTTGAACATC------------
12848765     GTTAAATATTATCAAGCATTAGCATAATAAAACCACT-GTTGAACACC------------
18044190     GTTAAATATTATCAAGCATTAGCATAATAAAACCACT-GTTGAACATCATTAGATTCAGT
28422109     GTTAAATATTATCAAGCATTAGCATAATAAAACCACT-GTTGAACATCATTAGATTCAGT
163043       GTTGAATACTTTCAAGCATTCACCTAAAAAAGCCCCCCATTAAACATTGTTATGCTCA--
5174742      GTTGAATACTTTCAGGCATTCACTTAATAAAGACACT-GTTAAGCACTGTTATGCTCAGT
             *** **** * *** *****  * *** ***  * *   ** * **              
Prim.cons.   GTTAAATATTATCAAGCATTAGCATAATAAAACCACTCGTTGAACATCATTAGATTCAGT

                   1150      1160      1170      1180      1190      1200
                      |         |         |         |         |         |
13385167     CATAGACTTGAAAGGTGCAATGTCTTTGATAGCTAATTCTAATAAAACATTACAGATTGT
12852344     CATAGACTTGAAAGGTGCAATGTCTTTGATAGCTAATTCTAATAAAACATTACAGATTGT
12834944     ------------------------------------------------------------
12848765     ------------------------------------------------------------
18044190     CATAGACTTGAAAGGTGCAATGTCTTTGATAGCTAATTCTAATAAAACATTACAGATTGT
28422109     CATAGACTTGAAAGGTGCAATGTCTTTGATAGCTAATTCTAATAAAACATTACAGATTGT
163043       ----------AAGGGTGCAGTGTCTTTGATAGTTAATTCTAATTAAAAATTGTAGATGAG
5174742      CATACACGCGAAAGGTACAATGTCTTT--TAGCTAATTCTAATTAAAAATTACAGACTGG
                                                                         
Prim.cons.   CATAGACTTGAAAGGTGCAATGTCTTTGATAGCTAATTCTAATAAAACATTACAGATTGT

                   1210      1220      1230      1240      1250      1260
                      |         |         |         |         |         |
13385167     TGTATTGGTGTTCTCATCTAAATTTCTTTTCGTATCTTGAACTTGAGAAAAGGTGGGGAC
12852344     TGTATTGGTGTTCTCATCTAAATTTCTTTTCGTATCTTGAACTTGAGAAAAGGTGGGGAC
12834944     ------------------------------------------------------------
12848765     ------------------------------------------------------------
18044190     TGTA-----------------------------------------AAAAAAAAAAAAAA-
28422109     TGTA-----------------------------------------AAAAAAAAAAAAAA-
163043       TGTAT----------------------------------------AAAATATTTGTGAAA
5174742      TGTAC----------------------------------------AAGATACTTGTG---
                                                                         
Prim.cons.   TGTATTGGTGTTCTCATCTAAATTTCTTTTCGTATCTTGAACTTGAAAAAA23TG3GAAC

                   1270      1280      1290      1300      1310      1320
                      |         |         |         |         |         |
13385167     ATTATTTTTCATCTCAAAGTGGATGGGAAAATCATTTTGATATCTAATATTTTTCTGTTT
12852344     ATTATTTTTCATCTCAAAGTGGATGGGAAAATCATTTTGATATCTAATATTTTTCTGTTT
12834944     ------------------------------------------------------------
12848765     ------------------------------------------------------------
18044190     ------------------------------------------------------------
28422109     ------------------------------------------------------------
163043       TCTGTA------------------------------------------------------
5174742      ------------------------------------------------------------
                                                                         
Prim.cons.   ATTATTTTTCATCTCAAAGTGGATGGGAAAATCATTTTGATATCTAATATTTTTCTGTTT

                   1330      1340
                      |         |
13385167     TGATATTAAACCTTTCACAGTTAT
12852344     TGATATTAAACCTTTCACAGTTAT
12834944     ------------------------
12848765     ------------------------
18044190     ------------------------
28422109     ------------------------
163043       ------------------------
5174742      ------------------------
                                                                         
Prim.cons.   TGATATTAAACCTTTCACAGTTAT
Alignment data :
Alignment length : 1344
Identity (*) : 806 is 59.97 %
Strongly similar (:) : 0 is 0.00 %
Weakly similar (.) : 0 is 0.00 %
Different : 538 is 40.03 %
Sequence 0001 : 13385167 ( 1316 residues).
Sequence 0002 : 12852344 ( 1316 residues).
Sequence 0003 : 12834944 ( 1060 residues).
Sequence 0004 : 12848765 ( 1048 residues).
Sequence 0005 : 18044190 ( 1194 residues).
Sequence 0006 : 28422109 ( 1194 residues).
Sequence 0007 : 163043 ( 1112 residues).
Sequence 0008 : 5174742 ( 1203 residues).
CLUSTALW options used :
dnamatrix=iub
endgaps=1
gapdist=8
gapext=0.05
gapopen=10.0
ktuple=1
maxdiv=40
outorder=aligned
pairgap=3
score=percent
topdiags=5
type=DNA
window=5
Result files (text) :
CLUSTALW
User : public@131.243.195.148. Last modification time : Mon Aug 4 01:48:47 2003. Current time : Mon Aug 4 01:48:47 2003 This service is supported by Ministere de la recherche (ACC-SV13), CNRS (IMABIO, COMI, GENOME) and Région Rhône-Alpes (Programme EMERGENCE) . Comments.