1. Cytochrome B Amino Acid/DNA Sequence Alignment
Subunit 7 alignment DNA with Univ. Delaware
Red: Complete Homology
- : Alignment not there. Sequence out of Frame. Maybe insert.
X: stop
 

Prim.cons.    AAACAATGGCCGCGGAAAAGGGGAGCGGCCCGGAAGCGGAAGCAGCATCTGAGATTCCGC

                                                                 0
                                                                 |
                                                                 M  G-  I
603816858F1   -----------GCGGC----------TCGAG----------G-TACCACCATGGG-CATC
 

                                10                            20
                                 |                             |
               H  F  G  N  L  A  R  V  R  H  I  I  T  Y  S  L  S  P  F  E
603816858F1   CACTTCGGGAACCTGGCCCGGGTGCGCCACATCATCACCTACAGCCTGTCGCCTTTCGAG
 
 

                                30                             40
                                 |                              |
               Q  R  A  I  P  N  I  F  S  D - A  L  P  N  V  W  R  R  F  S
603816858F1   CAGCGGGCCATACCCAACATCTTCTCGGAC-GCTCTGCCCAACGTGTGGCGGCGGTTCAG
 

                                 50                            60
                                  |                             |
                S  Q  V  F  K  V  A  P  P  F  L  G  A  Y  L  L  Y  S *W  G
603816858F1   CTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCTGGGCGCCTACCTCCTCTACTCCTGGGG
 
 

                                 70                            80        83
                                  |                             |        |
                T  Q  E  F  E  R  L  K  R  K  N  P  A  D  Y  E  N  D  Q  X
603816858F1   CACTCAAGAGTTTGAGAGGCTGAAGAGGAAGAACCCCGCTGACTATGAGAACGACCAGTG
 
 

2.  Sub 7  Protein Alignment
X = termination codon
red color = high homology
blue = homology
green = homology w/ mutation
- = Alignment not there. Sequence out of Frame. Maybe insert.

Links to sequences do not work because of recent changes in BBSRC database, To look up the
sequence, copy the sequency ID and go here  to paste it in and search on it.
                         70        80        90       100       110       120
                         |         |         |         |         |         |
603793183F1     --------------------------------------------------RLEGTTMGIH
603611212F1     ---------------------------------------------------HTVPPWGIH
603816858F1     -----------------------------------------GHAAAAQLRRSHGTTMGIH
603776147F1     ----------------------------------------------------HGTTMGIH
603816858F1     --------------------------------------------------AARGTTMGIH
pg1in.pk011.122 -----------------------------------------------------GTTMGIH
pat.pk0013.b5   -------------------------------------------------NSSHGTTMGIH
603411575F1     -----------------------------------------------AARGSHGTTMGIH
603408635F1     RGLTRRRRAPPAVTHSNPWXTMAAEKGSGPEAEAASEIPLPGHAAAAQLRRSHGTTMGIH
603586463F1     ---------------------------------------------AAR-----GTTMGIH
pgf1n.pk009.i7                 ----------------------------------------------------HGTTMGIH
                                                                      .. ***
Prim.cons.      RGLTRRRRAPPAVTHSNPWXTMAAEKGSGPEAEAASEIPLPGHAAAAQLRRSHGTTMGIH

                       130       140       150       160       170       180
                         |         |         |         |         |         |
603793183F1     FGNLARVRHIITYSLSPFEQRAIPNIFSEALPNVWRRFSSQVFKVAPPFLGAYLLYSWGT
603611212F1     FGNLARVRHIITYSLSPFEQRAIPNIFSEALPNVWRRFSSQVFKVAPPFLGAYLLYSWGT
603816858F1     FGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGT
603776147F1     FGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGT
603816858F1     FGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGT
pgl1npk011l22   FGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAY-------
patpk0013b5     FGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGT
603411575F1     FGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGT
6034x8635F1     FGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGT
603586463F1     FGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGT
pgf1npk09i7     FGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGT
           ****************************:************************
Prim.cons.      FGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGT

                       190       200       210       220       230       240
                         |         |         |         |         |         |
603793183F1     QEFERLKRKNPADYENDQXLHLXDVTAVYYQRPVAMLVRVTRGTGRXYIIMPNKLXLWPM
603611212F1     QEFERLKRKNPADYENDQXLHLXDVTAVYYQRPVAMLVRVTRGTGRXYIIMPNKLXLWPP
603816858F1     QEFERLKRKNPADYENDQXLHLXDVTAVYYQRPVAMLVHVTRGTGRXYIIMPNKLXLWPM
603776147F1     QEFERLKRKNPADYENDQXLHLXDVTAVYYQRPVAMLVHITRGTGRXYIIMPNKLXLWPM
603816858F1     QEFERLKRKNPADYENDQXLHLXDVTAVYYQRPVAMLVRVTRGTGRXYIIMPNKLXLWPM
pgl1npk011l22   -------------YENDQXLHLXDVTAVYYQRPVAMLVHVTRGTGRXYIIMPNKLXLWP-
patpk0013b5     QEFERLKRKNPADYENDQXLHLXDVTAVYYQRPVAMLVRVTRGTGRXYIIMPNKLXLWPM
603411575F1     QEFERLKRKNPADYENDQXLHLXDVTAVYYQRPVAMLVRVTRGTGRXYIIMPNKLXLWPT
6034x8635F1     QEFERLKRKNPADYENDQXLHLXDVTAVYYQRPVAMLVHVTRGTAQ--ILYNNAXXTLTL
603586463F1     QEFERLKRKNPADYENDQX-----------------------------------------
pgf1npk009i7    QEFERLKRKNPADYENDQXLHLXDVTAVYYQRPVAMLLHVPKGQGD--NIXX-CLINFNF
                             ******
Prim.cons.      QEFERLKRKNPADYENDQXLHLXDVTAVYYQRPVAMLV2VTRGTGRXYIIMPNKLXLWPM
 

3. Subunit 7 DNA Alignment

                                                                 0
                                                                 |
                                                                 M  G-  I
603816858F1   -----------GCGGC----------TCGAG----------G-TACCACCATGGG-CATC
603793183F1   -----------GCGGC----------TCGAG----------GGTACCACCATGGG-CATC
603586463F1   -----------GCGGC----------TCGAG----------G-TACCACCATGGG-CATC
603542439F1   ---CGGGGCACGCGGCAGCAGCGCAGTTGAGAAGGTCACACGGTACCACCATGGG-CATC
603776147F1   ------------CCAC--------------G----------G-TACCACCATGGG-CATC
udcxxx10      -------------CAC--------------G----------G-TACCACCATGGG-CATC
udaxxx8       ------AATTCGTCACA-------------C----------GGTACCACCATGGG-CATC
udbxxx9       --------------AC--------------G----------G-TACCACCATGGG-CATC
603411575F1   -----------GCGGC----------TCGAG--GGTCACACGGTACCACCATGGG-CATC
603611212F1   -----------GTCACA-------------C----------GGTACCACCATGGGGCATC
603408635F1   TTCCGGGGCACGCGGCAGCAGCGCAGTTGAGAAGGTCACACGGTACCACCATGGG-CATC
                             *                         * ************ ****
Prim.cons.    TTCCGGGGCACGCGGCAGCAGCGCAGTCGAGAAGGTCACACGGTACCACCATGGGGCATC

                                10                            20
                                 |                             |
               H  F  G  N  L  A  R  V  R  H  I  I  T  Y  S  L  S  P  F  E
603816858F1   CACTTCGGGAACCTGGCCCGGGTGCGCCACATCATCACCTACAGCCTGTCGCCTTTCGAG
603793183F1   CACTTCGGGAACCTGGCCCGGGTGCGCCACATCATCACCTACAGCCTGTCGCCTTTCGAG
603586463F1   CACTTCGGGAACCTGGCCCGGGTGCGCCACATCATCACCTACAGCCTGTCGCCTTTCGAG
603542439F1   CACTTCGGGAACCTGGCCCGGGTGCGCCACATCATCACCTACAGCCTGTCGCCTTTCGAG
603776147F1   CACTTCGGGAACCTGGCCCGGGTGCGCCACATCATCACCTACAGCCTGTCGCCTTTCGAG
udcxxx10      CACTTCGGGAACCTGGCCCGGGTGCGCCACATCATCACCTACAGCCTGTCGCCTTTCGAG
udaxxx8       CACTTCGGGAACCTGGCCCGGGTGCGCCACATCATCACCTACAGCCTGTCGCCTTTCGAG
udbxxx9       CACTTCGGGAACCTGGCCCGGGTGCGCCACATCATCACCTACAGCCTGTCGCCTTTCGAG
603411575F1   CACTTCGGGAACCTGGCCCGGGTGCGCCACATCATCACCTACAGCCTGTCGCCTTTCGAG
603611212F1   CACTTCGGGAACCTGGCCCGGGTGCGCCACATCATCACCTACAGCCTGTCGCCTTTCGAG
603408635F1   CACTTCGGGAACCTGGCCCGGGTGCGCCACATCATCACCTACAGCCTGTCGCCTTTCGAG
           ************************************************************
Prim.cons.    CACTTCGGGAACCTGGCCCGGGTGCGCCACATCATCACCTACAGCCTGTCGCCTTTCGAG
                                                                 30                                                        40
                                 |                              |
               Q  R  A  I  P  N  I  F  S  D - A  L  P  N  V  W  R  R  F  S
603816858F1   CAGCGGGCCATACCCAACATCTTCTCGGA-CGCTCTGCCCAACGTGTGGCGGCGGTTCAG
603793183F1   CAGCGGGCCATACCCAACATCTTCTCGGA-GGCTCTGCCCAACGTGTGGCGGCGGTTCAG
603586463F1   CAGCGGGCCATACCCAACATCTTCTCGGA-CGCTCTGCCCAACGTGTGGCGGCGGTTCAG
603542439F1   CAGCGGGCCATACCCAACATCTTCTCGGA-CGCTCTGCCCAACGTGTGGCGGCGGTTCAG
603776147F1   CAGCGGGCCATACCCAACATCTTCTCGGA-CGCTCTGCCCAACGTGTGGCGGCGGTTCAG
udcxxx10      CAGCGGGCCATACCCAACATCTTCTCGGA-CGCTCTGCCCAACGTGTGGCGGCGGTTCAG
udaxxx8       CAGCGGGCCATACCCAACATCTTCTCGGA-CGCTCTGCCCAACGTGTGGCGGCGGTTCAG
udbxxx9       CAGCGGGCCATACCCAACATCTTCTCGGA-CGCTCTGCCCAACGTGTGGCGGCGGTTCAG
603411575F1   CAGCGGGCCATACCCAACATCTTCTCGGA-CGCTCTGCCCAACGTGTGGCGGCGGTTCAG
603611212F1   CAGCGGGCCATACCCAACATCTTCTCGGA-CGCTCTGCCCAACGTGTGGCGGCGGTTCAG
603408635F1   CAGCGGGCCATACCCAACATCTTCTCGGA-CGCTCTGCCCAACGTGTGGCGGCGGTTCAG
           *****************************  *****************************
Prim.cons.    CAGCGGGCCATACCCAACATCTTCTCGGACCGCTCTGCCCAACGTGTGGCGGCGGTTCAG

                                 50                            60
                                  |                             |
                S  Q  V  F  K  V  A  P  P  F  L  G  A  Y  L  L  Y  S *W  G
603816858F1   CTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCTGGGCGCCTACCTCCTCTACTCCTGGGG
603793183F1   CTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCTGGGCGCCTACCTCCTCTACTCCTGGGG
603586463F1   CTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCTGGGCGCCTACCTCCTCTACTCCTGGGG
603542439F1   CTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCTGGGCGCCTACCTCCTCTACTCCTGGGG
603776147F1   CTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCTGGGCGCCTACCTCCTCTACTCCTGGGG
udcxxx10      CTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCTGGGCGCCTACCTCCTCTACTCCTGGGG
udaxxx8       CTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCTGGGCGCCTACCTCCTCTACTCCTGGGG
udbxxx9       CTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCTGGGCGCCTA------------------
603411575F1   CTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCTGGGCGCCTACCTCCTCTACTCCTGGGG
603611212F1   CTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCTGGGCGCCTACCTCCTCTACTCCTGGGG
603408635F1   CTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCTGGGCGCCTACCTCCTCTACTCCTGGGG
           ******************************************
Prim.cons.    CTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCTGGGCGCCTACCTCCTCTACTCCTGGGG

                                 70                            80       83
                                  |                             |        |
                T  Q  E  F  E  R  L  K  R  K  N  P  A  D  Y  E  N  D  Q  X
603816858F1   CACTCAAGAGTTTGAGAGGCTGAAGAGGAAGAACCCCGCTGACTATGAGAACGACCAGTG
603793183F1   CACTCAAGAGTTTGAGAGGCTGAAGAGGAAGAACCCCGCTGACTATGAGAACGACCAGTG
603586463F1   CACTCAAGAGTTTGAGAGGCTGAAGAGGAAGAACCCCGCTGACTATGAGAACGACCAGTG
603542439F1   CACTCAAGAGTTTGAGAGGCTGAAGAGGAAGAACCCCGCTGACTATGAGAACGACCAGTG
603776147F1   CACTCAAGAGTTTGAGAGGCTGAAGAGGAAGAACCCCGCTGACTATGAGAACGACCAGTG
udcxxx10      CACTCAAGAGTTTGAGAGGCTGAAGAGGAAGAACCCCGCTGACTATGAGAACGACCAGTG
udaxxx8       CACTCAAGAGTTTGAGAGGCTGAAGAGGAAGAACCCCGCTGACTATGAGAACGACCAGTG
udbxxx9       ------------------------------------------CTATGAGAACGACCAGTG
603411575F1   CACTCAAGAGTTTGAGAGGCTGAAGAGGAAGAACCCCGCTGACTATGAGAACGACCAGTG
603611212F1   CACTCAAGAGTTTGAGAGGCTGAAGAGGAAGAACCCCGCTGACTATGAGAACGACCAGTG
603408635F1   CACTCAAGAGTTTGAGAGGCTGAAGAGGAAGAACCCCGCTGACTATGAGAACGACCAGTG
                *                                        *****************
Prim.cons.    CACTCAAGAGTTTGAGAGGCTGAAGAGGAAGAACCCCGCTGACTATGAGAACGACCAGTG
 

4. Information
0 = X

http://www.chick.umist.ac.uk/cgi-bin/chicken_database.cgi?show_seq=603411575F1
>603411575F1 Frame = +1 31-273
GCGGCTCGAGGGTCACACGGTACCACCATGGGCATCCACTTCGGGAACCTGGCCCGGGTG
CGCCACATCATCACCTACAGCCTGTCGCCTTTCGAGCAGCGGGCCATACCCAACATCTTC
TCGGACGCTCTGCCCAACGTGTGGCGGCGGTTCAGCTCGCAGGTCTTCAAGGTTGCACCC
CCCTTCCTGGGCGCCTACCTCCTCTACTCCTGGGGCACTCAAGAGTTTGAGAGGCTGAAG
AGGAAGAACCCCGCTGACTATGAGAACGACCAGTGACTGCATCTCTAAGATGTTACCGCT
GTGTATTACCAACGGCCTGTTGCTATGCTTGTTCGTGTAACCAGAGGGACAGGGAGATAA
TATATAATAATGCCTAATAAACTTTAACTTTGGCCCACAAAAA

Frame  2
GSSSAASDTPCLLLSSPLPCKASRSCIFNGANSRV0DC0SRWDSETSSAGACSPEGSGDR
RGLTRRRRAPPAVTHSNPW0TMAAEKGSGPEAEAASEIPLPGHAAAAQLRRSHGTTMGIH
FGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGT
QEFERLKRKNPADYENDQ0LHL0DVTAVYYQRPVAMLVHVTRGTAQILYNNA00TLTLAL
 

http://www.chick.umist.ac.uk/cgi-bin/chicken_database.cgi?show_seq=603816858F1
>603816858F1 cloneID='ChEST812c15' Frame = +1 222-264
GCGGCTCGAGGTACCACCATGGGCATCCACTTCGGGAACCTGGCCCGGGTGCGCCACATC
ATCACCTACAGCCTGTCGCCTTTCGAGCAGCGGGCCATACCCAACATCTTCTCGGACGCT
CTGCCCAACGTGTGGCGGCGGTTCAGCTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCTG
GGCGCCTACCTCCTCTACTCCTGGGGCACTCAAGAGTTTGAGAGGCTGAAGAGGAAGAAC
CCCGCTGACTATGAGAACGACCAGTGACTGCATCTCTAAGATGTTACCGCTGTGTATTAC
CAACGGCCTGTTGCTATGCTTGTTCGTGTAACCAGAGGGACAGGGAGATAATATATAATA
ATGCCTAATAAACTTTAACTTTGGCCCATGTCTTTATACGGAGTCTGTCTTGAAATGTTT
AAGGTGAATTGCACCACGTTATCTGTCAGGTGAATTCCATACAGAGAGATAACTGTACTA
AAATTCTCTGGGCTCACATTGCTTTATTTCACGTTTTCAGACTCTCTGACTCCTACTTCC
TGGAAATACTTCTCAGTGGTAGTTAGCTGAAGGCAGCCCTTGCTACAGCACAGGTGATGA
GAAATAACAGTACAGCGGTGAGCTCTTTGATCCCTTTATCTTTCCCTCACTAACCACTTT
TTGCTTGAATTAAAAATACATTCTAGTCTCCGTACCTGTGAAGAACAACAGTCTGATATG
ATACTGACAAAAATTGGCCAAG

Frame  0
AARGTTMGIHFGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFL
GAYLLYSWGTQEFERLKRKNPADYENDQ0LHL0DVTAVYYQRPVAMLVRVTRGTGR0YII
MPNKL0LWPMSLYGVCLEMFKVNCTTLSVR0IPYREITVLKFSGLTLLYFTFSDSLTPTS
WKYFSVVVS0RQPLLQHR00EITVQR0AL0SLYLSLTNHFLLELKIHSSLRTCEEQQSDM

http://www.chick.umist.ac.uk/cgi-bin/chicken_database.cgi?show_seq=603950022F1
>603542439F1 cloneID='ChEST513n9' Frame = +3 51-293
CGGGGCACGCGGCAGCAGCGCAGTTGAGAAGGTCACACGGTACCACCATGGGCATCCACT
TCGGGAACCTGGCCCGGGTGCGCCACATCATCACCTACAGCCTGTCGCCTTTCGAGCAGC
GGGCCATACCCAACATCTTCTCGGACGCTCTGCCCAACGTGTGGCGGCGGTTCAGCTCGC
AGGTCTTCAAGGTTGCACCCCCCTTCCTGGGCGCCTACCTCCTCTACTCCTGGGGCACTC
AAGAGTTTGAGAGGCTGAAGAGGAAGAACCCCGCTGACTATGAGAACGACCAGTGACTGC
ATCTCTAAGATGTTACCGCTGTGTATTACCAACGGCCTGTTGCTATGCTTGTTCATGTAA
CCAGAGGGACAGGGAGATAATATATAATAATGCCTAATAAACTTTAACTTTGGCCCATGT
CTTTATACGGAGTCTGTCTTGAAATGTTTAAGGTGAATTGCACCACGTTATCTGTCAGGT
GAATTCCATACAGAGAGATAACTGTACTAAAATTCTCTGGGCTCACATTGCTTTATTTCA
CGTTTTCAGACTCTCTGACTCCTACTTCCTGGAAATACTTCTCAGTGTAGTTAGCTGAAG
GCAGCCCTTGCTACAGCACAGGTGATGAGAAATAACAGTACAGCGGTGAGCTCTTTGATC
CCTTTATCTTTCCCTCACTAACCACTTTTGCTTGAATTAGAATACATTCTAGTCTCCGTA
CCTGTGAAGAACAAACAGTCTTGATATGATACTGACAAAAATTGCCCAACTGGACTGATG
GTTCAGACTTGAATAGAGCTTTGACCTTCTATACAATACCAAGTATCATCTGATTATTCT
TACTC

Frame  2
GHAAAAQLRRSHGTTMGIHFGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQ
VFKVAPPFLGAYLLYSWGTQEFERLKRKNPADYENDQ0LHL0DVTAVYYQRPVAMLVHVT
RGTGR0YIIMPNKL0LWPMSLYGVCLEMFKVNCTTLSVR0IPYREITVLKFSGLTLLYFT
FSDSLTPTSWKYFSV0LAEGSPCYSTGDEK0QYSGELFDPFIFPSLTTFA0IRIHSSLRT
CEEQTVLI0Y0QKLPNWTDGSDLNRALTFYTIPSII0LFLL
 

http://www.chick.umist.ac.uk/cgi-bin/chicken_database.cgi?show_seq=603776147F1
>603776147F1 cloneID='ChEST717m12'  Frame = +2 17-259
CCACGGTACCACCATGGGCATCCACTTCGGGAACCTGGCCCGGGTGCGCCACATCATCAC
CTACAGCCTGTCGCCTTTCGAGCAGCGGGCCATACCCAACATCTTCTCGGACGCTCTGCC
CAACGTGTGGCGGCGGTTCAGCTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCTGGGCGC
CTACCTCCTCTACTCCTGGGGCACTCAAGAGTTTGAGAGGCTGAAGAGGAAGAACCCCGC
TGACTATGAGAACGACCAGTGACTGCATCTCTAAGATGTTACCGCTGTGTATTACCAACG
GCCTGTTGCTATGCTTGTTCATATAACCAGAGGGACAGGGAGATAATATATAATAATGCC
TAATAAACTTTAACTTTGGCCCATGTCTCTAAAAA

Frame  1
HGTTMGIHFGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGA
YLLYSWGTQEFERLKRKNPADYENDQ0LHL0DVTAVYYQRPVAMLVHITRGTGR0YIIMP
NKL0LWPMSLK

http://www.chick.umist.ac.uk/cgi-bin/chicken_database.cgi?show_seq=603408635F1
>603408635F1 cloneID='ChEST322e10'  Frame = +3 354-596
GCGGCTCGAGCTCAGCAGCGTCAGACACGCCCTGCCTGCTCCTCTCTTCCCCCCTTCCCT
GCAAAGCCAGCAGAAGCTGCATCTTTAACGGAGCTAATTCGCGTGTGTAGGATTGTTAAA
GCCGATGGGACAGCGAGACGAGCTCCGCAGGCGCCTGCAGCCCTGAGGGGAGCGGCGATC
GCCGAGGCCTCACGAGGCGCAGGCGCGCACCGCCAGCTGTAACCCATAGTAACCCATGGT
AAACAATGGCCGCGGAAAAGGGGAGCGGCCCGGAAGCGGAAGCAGCATCTGAGATTCCGC
TTCCGGGGCACGCGGCAGCAGCGCAGTTGAGAAGGTCACACGGTACCACCATGGGCATCC
ACTTCGGGAACCTGGCCCGGGTGCGCCACATCATCACCTACAGCCTGTCGCCTTTCGAGC
AGCGGGCCATACCCAACATCTTCTCGGACGCTCTGCCCAACGTGTGGCGGCGGTTCAGCT
CGCAGGTCTTCAAGGTTGCACCCCCCTTCCTGGGCGCCTACCTCCTCTACTCCTGGGGCA
CTCAAGAGTTTGAGAGGCTGAAGAGGAAGAACCCCGCTGACTATGAGAACGACCAGTGAC
TGCATCTCTAAGATGTTACCGCTGTGTATTACCAACGGCCTGTTGCTATGCTTGTTCATG
TAACCAGAGGGACAGCGCAGATACTATATAATAATGCCTAATAAACTTTAACTTTGGCCC
TTCAAAAAA

Frame  2
GSSSAASDTPCLLLSSPLPCKASRSCIFNGANSRV0DC0SRWDSETSSAGACSPEGSGDR
RGLTRRRRAPPAVTHSNPW0TMAAEKGSGPEAEAASEIPLPGHAAAAQLRRSHGTTMGIH
FGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGT
QEFERLKRKNPADYENDQ0LHL0DVTAVYYQRPVAMLVHVTRGTAQILYNNA00TLTLAL

http://www.chick.umist.ac.uk/cgi-bin/chicken_database.cgi?show_seq=603793183F1
>603793183F1 cloneID='ChEST759f21' Frame = +2 23-265
GCGGCTCGAGGGTACCACCATGGGCATCCACTTCGGGAACCTGGCCCGGGTGCGCCACAT
CATCACCTACAGCCTGTCGCCTTTCGAGCAGCGGGCCATACCCAACATCTTCTCGGAGGC
TCTGCCCAACGTGTGGCGGCGGTTCAGCTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCT
GGGCGCCTACCTCCTCTACTCCTGGGGCACTCAAGAGTTTGAGAGGCTGAAGAGGAAGAA
CCCCGCTGACTATGAGAACGACCAGTGACTGCATCTCTAAGATGTTACCGCTGTGTATTA
CCAACGGCCTGTTGCTATGCTTGTTCGTGTAACCAGAGGGACAGGGAGATAATATATAAT
AATGCCTAATAAACTTTAACTTTGGCCCATGTCTTTATACGGAGTCTGTCTTGAAATGTT
TAAGGTGAATTGCACCACGTTATCTGTCAGGTGAATTCCATACAGAGAGATAACTGTACT
AAAATTCTCTGGGCTCACATTGCTTTATTTCACGTTTTCAGACTCTCTGACTCCTACTTC
CTGGAAATACTTCTCAGTGTAGTTAGCTGAAGGCAGCCCTTGCTACAGCACAGGTGATGA
GAAATAACAGTACAGCGGTGAGCTCTTTGATCCCTTTATCTTTCCCTCACTAACCACTTG
TTGCTTTGAATTAGAAATACATTCTAGTCTCAGTACCTGTGAAGAACAAAACAGTCTGAT
ATGATACTGACAAAAATTGCCAACTGGACTGATGG

Frame  1
RLEGTTMGIHFGNLARVRHIITYSLSPFEQRAIPNIFSEALPNVWRRFSSQVFKVAPPFL
GAYLLYSWGTQEFERLKRKNPADYENDQ0LHL0DVTAVYYQRPVAMLVRVTRGTGR0YII
MPNKL0LWPMSLYGVCLEMFKVNCTTLSVR0IPYREITVLKFSGLTLLYFTFSDSLTPTS
WKYFSV0LAEGSPCYSTGDEK0QYSGELFDPFIFPSLTTCCFELEIHSSLSTCEEQNSLI
0Y0QKLPTGLM

http://www.chick.umist.ac.uk/cgi-bin/chicken_database.cgi?show_seq=603611212F1
>603611212F1 cloneID='ChEST601g4'  Frame = +3 21-263
GTCACACGGTACCACCATGGGGCATCCACTTCGGGAACCTGGCCCGGGTGCGCCACATCA
TCACCTACAGCCTGTCGCCTTTCGAGCAGCGGGCCATACCCAACATCTTCTCGGAGGCTC
TGCCCAACGTGTGGCGGCGGTTCAGCTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCTGG
GCGCCTACCTCCTCTACTCCTGGGGCACTCAAGAGTTTGAGAGGCTGAAGAGGAAGAACC
CCGCTGACTATGAGAACGACCAGTGACTGCATCTCTAAGATGTTACCGCTGTGTATTACC
AACGGCCTGTTGCTATGCTTGTTCGTGTAACCAGAGGGACAGGGAGATAATATATAATAA
TGCCTAATAAACTTTAACTTTGGCCCCCAAAAA

HTVPPWGIHFGNLARVRHIITYSLSPFEQRAIPNIFSEALPNVWRRFSSQVFKVAPPFLG
AYLLYSWGTQEFERLKRKNPADYENDQ0LHL0DVTAVYYQRPVAMLVRVTRGTGR0YIIM
PNKL0LWPPK

http://www.chick.umist.ac.uk/cgi-bin/chicken_database.cgi?show_seq=603586463F1
>603586463F1 cloneID='ChEST543m16' Frame = +1 22-117 Frame = +3 115-676
*insert at base#115, Use frame 3 starting base G. * literary insert amino acid D in base # 115 *
GCGGCTCGAGGTACCACCATGGGCATCCACTTCGGGAACCTGGCCCGGGTGCGCCACATC
ATCACCTACAGCCTGTCGCCTTTCGAGCAGCGGGCCATACCCAACATCTTCTCGGAGCGC
TCTGCCCAACGTGTGGCGGCGGTTCAGCTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCT
GGGCGCCTACCTCCTCTACTCCTGGGGCACTCAAGAGTTTGAGAGGCTGAAGAGGAAGAA
CCCCGCTGACTATGAGAACGACCAGTGACTGCATCTCTAAGATGTTACCGCTGTGTATTA
CCAACGGCCTGTTGCTATGCTTGTTCATGTAACCAGAGGGACAGGGAGATAATATATAAT
AATGCCTAATAAACTTTAACTTTGGCCCATGTCTTTATACGGAGTCTGTCTTGAAATGTT
TAAGGTGAATTGCACCACGTTATCTGTCAGGTGACTTCCATACAGAGAGATAACTGTACT
AAAATTCTCTGGGCTCACATTGCTTTATTTCACGTTTTCAGACTCTCTGACTCCTACTTC
CTGGAAATACTTCTCAGTGTAGTTAGCTGAAGGCAGCCCTTGCTACAGCACAGGTGATGA
GAAATAACAGTACAGCGGTGAGCTCTTTGATCCCTTTATCTTTCCCTCACTAACCACTTT
TGCTTGAATTAGAATC

AARGTTMGIHFGNLARVRHIITYSLSPFEQRAIPNIFSERSAQRVAAVQLAGLQGCTPLP
GRLPPLLLGHSRV0EAEEEEPR0L0ERPVTASLRCYRCVLPTACCYACSCNQRDREIIYN
NA00TLTLAHVFIRSLS0NV0GELHHVICQVTSIQRDNCTKILWAHIALFHVFRLSDSYF
LEILLSVVS0RQPLLQHR00EITVQR0AL0SLYLSLTNHFCLN0N C

http://www.chickest.udel.edu/public_php/webBlast.php#pat.pk0013.b5
>pat.pk0013.b5  length=398
AATTCGTCACACGGTACCACCATGGGCATCCACTTCGGGAACCTGGCCCGGGTGCGCCAC
ATCATCACCTACAGCCTGTCGCCTTTCGAGCAGCGGGCCATACCCAACATCTTCTCGGAC
GCTCTGCCCAACGTGTGGCGGCGGTTCAGCTCGCAGGTCTTCAAGGTTGCACCCCCCTTC
CTGGGCGCCTACCTCCTCTACTCCTGGGGCACTCAAGAGTTTGAGAGGCTGAAGAGGAAG
AACCCCGCTGACTATGAGAACGACCAGTGACTGCATCTCTAAGATGTTACCGCTGTGTAT
TACCAACGGCCTGTTGCTATGCTTGTTCGTGTAACCAGAGGGACAGGGAGATAATATATA                                                                        ATAATGCCTAATAAACTTTAACTTTGGCCCATGTCTTT

NSSHGTTMGIHFGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPF
LGAYLLYSWGTQEFERLKRKNPADYENDQxLHLxDVTAVYYQRPVAMLVRVTRGTGRxYI
IMPNKLxLWPMS

http://www.chickest.udel.edu/public_php/webBlast.php#pgl1n.pk011.l22
>pgl1n.pk011.l22 length=380
ACGGTACCACCATGGGCATCCACTTCGGGAACCTGGCCCGGGTGCGCCACATCATCACCT
ACAGCCTGTCGCCTTTCGAGCAGCGGGCCATACCCAACATCTTCTCGGACGCTCTGCCCA
ACGTGTGGCGGCGGTTCAGCTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCTGGGCGCCT
ACTATGAGAACGACCAGTGACTGCATCTCTAAGATGTTACCGCTGTGTATTACCAACGGC
CTGTTGCTATGCTTGTTCATGTAACCAGAGGGACAGGGAGATAATATATAATAATGCCTA
ATAAACTTTAACTTTGGCCC

GTTMGIHFGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAY
YENDQxLHLxDVTAVYYQRPVAMLVHVTRGTGRxYIIMPNKLxLWP 

http://www.chickest.udel.edu/public_php/webBlast.php#pgf1n.pk009.i7
>pgf1n.pk009.i7  length=385
CACGGTACCACCATGGGCATCCACTTCGGGAACCTGGCCCGGGTGCGCCACATCATCACC
TACAGCCTGTCGCCTTTCGAGCAGCGGGCCATACCCAACATCTTCTCGGACGCTCTGCCC
AACGTGTGGCGGCGGTTCAGCTCGCAGGTCTTCAAGGTTGCACCCCCCTTCCTGGGCGCC
TACCTCCTCTACTCCTGGGGCACTCAAGAGTTTGAGAGGCTGAAGAGGAAGAACCCCGCT
GACTATGAGAACGACCAGTGACTGCATCTCTAAGATGTTACCGCTGTGTATTACCAACGG
CCTGTTGCTATGCTTCTTCATGTACCAAAGGGACAGGGAGATAATATATAATAATGCCTA
ATAAACTTTA ACTTTGGCCCATGTC

HGTTMGIHFGNLARVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGA
YLLYSWGTQEFERLKRKNPADYENDQxLHLxDVTAVYYQRPVAMLLHVPKGQGDNIxxCL
INFNFGPC